Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2369 107 3e-21 seq712 105 1e-20 seq367 93.3 7e-17 seq64 82.4 1e-13 >seq2369 Length=6163 Score = 107 bits (118), Expect = 3e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||| ||| ||| |||| ||||| ||||||||| || ||||||||||| ||||| | Sbjct 1661 CTACTTAGTAGGCTAAAGTCTAGTTCGATATCGGAATAAATCAGACAAATCAATCCACTA 1602 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||||||||||||| ||||||| ||| ||||||| Sbjct 1601 ACTAAGAACGGCCATCCACCACCGGCCACTGAATCAA 1565 >seq712 Length=47232 Score = 105 bits (116), Expect = 1e-20 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| ||| || |||||| ||||||||||||| |||||||||||||| ||||||| Sbjct 26151 CTATTTAATAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCAATCCACCA 26092 Query 202 ACTAAGAACGGCCATGCA 219 |||||||||||||||||| Sbjct 26091 ACTAAGAACGGCCATGCA 26074 >seq367 Length=70959 Score = 93.3 bits (102), Expect = 7e-17 Identities = 87/110 (79%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| ||| || |||||| ||||||||| | | || ||||||||||| ||||||| Sbjct 2666 CTATTTAATAGGCTACAGTCTCGCTCGTTATCGCAGTAAATCAGACAAATCAATCCACCA 2725 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||| |||||||||| || |||||| ||||||| ||| ||| |||| Sbjct 2726 ACTGAGAACGGCCA---ACAACCACC----GAATCAACAAAAAGCAATCA 2768 >seq64 Length=136866 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/67 (88%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAA--TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 ||||| |||||||||||| | |||||||||||||| ||||||||||||||||||| ||| Sbjct 126909 TCTCGCTCGTTATCGGAAAATAAACCAGACAAATCAATCCACCAACTAAGAACGGCTATG 126968 Query 218 CACCACC 224 || ||| Sbjct 126969 TACTACC 126975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796770057999