Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq822 109 9e-22 seq1132 102 1e-19 seq3356 96.9 6e-18 seq1133 75.2 2e-11 >seq822 Length=41860 Score = 109 bits (120), Expect = 9e-22 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 49 TAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT-GAACAATC 107 |||||||| |||||| || || ||| |||| |||||| | | ||||| ||| | | Sbjct 26006 TAACCTGTTTCATGATGGCCTGAACTTAGCTTTCGTTCCTGACTGCTGGGTAGAATAGTG 25947 Query 108 CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 || | | |||||||| | ||| ||| | | || |||||||||||| |||||| | Sbjct 25946 TAATGTTGGAGGAATTCTGTTCCGGAATGCTGGAAACGACCGACATCGAAGAATCAAAGA 25887 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||| |||||| || |||||| | || |||||||| | | |||||||||||||||| Sbjct 25886 TCAAGGTCGCTGTGGACGCTTTGTTG---CAAGCCAGACACCTTTGTGGTAACTTTTCTG 25830 Query 228 GCACCTCTAGC 238 ||||| || || Sbjct 25829 GCACCGCTTGC 25819 >seq1132 Length=29963 Score = 102 bits (112), Expect = 1e-19 Identities = 94/118 (80%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 || ||||| |||||| | || ||||||||||| ||||||||||||||||||||||||||| Sbjct 24828 AACGCAACATCGCTACGGACTCTTGGCTGCCATAAGCCAGTTATCCCTGTGGTAACTTTT 24769 Query 225 CTGGCACCTCTAGCCTCA-AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 ||| ||||||| || | | ||| | | || ||||||||||||| | ||||| Sbjct 24768 CTGACACCTCTTGCTAGAGACCTTCTAATTCCAAAGGGATCGATAGGCCTCGTTTTCA 24711 >seq3356 Length=837 Score = 96.9 bits (106), Expect = 6e-18 Identities = 127/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 540 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAATGGGCGAACAGCCCAACC 481 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||||||| || | | ||| || ||||||||||||| | |||| | Sbjct 480 CTTGGGACCGAATTCAGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCAC 424 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | ||||| |||||||| |||| ||||| Sbjct 423 TCCGTCGATGTGAACTCTTGGGAGTGATAAGCCTGTTATCCCCAGGGTAGCTTTT 369 >seq1133 Length=29954 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 ||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 18346 TTGGCTGCCACAAGCCAGTTATCCCAATGGTAACTTTTCTGACACCTCT 18394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854366857824