Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq3356 259 9e-67 seq3187 163 6e-38 >seq3356 Length=837 Score = 259 bits (286), Expect = 9e-67 Identities = 248/313 (79%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||||||| || | ||||||| ||||||||||| |||| || ||| ||| ||||||||| Sbjct 78 ACGCCAGTCTTAATGGAGCCGGTGTTGGGATACCACCCTTGCAGTACTGGGTTTCTAACC 137 Query 90 G-GACGACGTATAACCGTTGA--CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT 146 | || | || | || ||| ||||||| |||| | |||| ||||||||||||||||| Sbjct 138 GAGATCA-GTGAAGCC--TGATCCGGGACAATGTCTGGCGGGGAGTTTGACTGGGGCGGT 194 Query 147 CGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGC 206 ||||||| |||| ||| ||||||||| ||||| | ||||||| ||| ||||||||| | Sbjct 195 CGCCTCCGAAAGGGTATCGGAGGCGCTCAAAGGTTCCCTCAGAATGGTCGGAAACCATTC 254 Query 207 GCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | || ||||||||| ||||| | ||||||||||||| | | |||||| ||||| Sbjct 255 GGAGAGCGCAAAGGCAGAAGGGAGCCTGACTGCGACACCGACGGCTGGAGCAGGTACGAA 314 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 ||| || |||| |||||||| ||| | ||| | ||| |||||| |||||||||||| Sbjct 315 AGTAGGACTTAGTGATCCGGTGGTATAAAGTGGGATTGCCATCGCTCAACGGATAAAAGC 374 Query 327 TACCCTGGGGATA 339 ||||||||||||| Sbjct 375 TACCCTGGGGATA 387 >seq3187 Length=1114 Score = 163 bits (180), Expect = 6e-38 Identities = 213/295 (72%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 13 GAGGCAAAGAGATGGATACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTT 72 ||||||| ||| || |||||||| || ||||||| ||||| ||||| || || Sbjct 709 GAGGCAATGAGCCGGCGACGCCAGTTGTCGGGGAGCCGTTGTTGAAATACTGACCTTGAC 650 Query 73 GTATTGGATTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGT 132 |||| | | |||||| ||| ||||| ||||| || | ||| ||| Sbjct 649 ATATTTGGTCTCTAACTCT----CGT------GTTGAGAGGACACTGCTTGGTGGGTAGT 600 Query 133 TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTG 192 |||||||||| |||||||||| |||| ||||||||||| || |||| | ||||||| | Sbjct 599 TTGACTGGGGTGGTCGCCTCCAAAAGCGTAACGGAGGCTCCTAAAGGTGCCCTCAGGCCG 540 Query 193 GATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGT 252 ||| |||| |||| ||||||| |||| ||||| | |||||||||| || || || Sbjct 539 ATTGGCAACCGGCCGCAGAGTGCAATGGCATAAGGGCGCTTGACTGCGAGACAAACATGT 480 Query 253 CTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 | | |||| | |||| | | || || |||||||||||| | | |||||| ||||| Sbjct 479 CGAACAGGAAGGAAACTTGAGCATAGTGATCCGGCGGTTCCGCATGGAAGGGCCG 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982361892704