Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2930 264 2e-68 >seq2930 Length=1850 Score = 264 bits (292), Expect = 2e-68 Identities = 261/335 (78%), Gaps = 18/335 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||||||||| |||||| | | | |||||||| ||| ||| ||||| |||| |||| Sbjct 973 TTTACAATCCGAAAACCTTCATCCTC-CACGCGGCGTTG-CTGCTTCAGGGTTTCCCCCA 916 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 TTGAGCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 856 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| || | ||||||||||||||||||||||| Sbjct 855 GTGTCCGTTCACCCTCTCAGGCCGGATACCCGTCATAGCCTTGGTGAGCCATTACCTCAC 796 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||| |||| || ||| |||||| |||| |||||| || || |||| Sbjct 795 CAACAAGCTGATAGGACATAGGCTGATCTCATAGCGAAA------AA---------CTTT 751 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||||||| |||| | |||||| ||||||| | | ||||| |||| ||| Sbjct 750 CCCCCGTAGGGAGTATCCAGTATTAATCATCGTTTCCAATGGCTATCCTAGACTATGAGG 691 Query 302 CAGAT-TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || |||| ||||||||||||||| |||| || Sbjct 690 CACATAACCTATGCATTACTCACCCGTGCGCCACT 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071958417120