Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2930 251 1e-64 seq3726 107 3e-21 >seq2930 Length=1850 Score = 251 bits (278), Expect = 1e-64 Identities = 234/292 (80%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||||| ||||||||||||| || |||| ||||||||| | || | Sbjct 1291 CCCACGCTTTCGCGCATCAGCGTCAGTTATGTTCTAGCAGGTCGCCTTCGCAATGAGTAT 1232 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||| || |||||| |||| ||| |||||| ||||||| | ||||||| || Sbjct 1231 TCCTCTTGATCTCTACGGATTTTACCCCTACACCAAGAATTCCACCTACCTCTCCCATAC 1172 Query 121 TCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGT-TTTCACATCTGA 178 || |||| ||||||||||||||||| |||||| || |||| |||| |||||||||||| Sbjct 1171 TCTAGAATAACAGTTTCAAATGCAGTTCTATGG-TTAAGCC-ATAGGATTTCACATCTGA 1114 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||||| |||||||||| ||| |||||| |||| | | |||| |||||||||| ||| Sbjct 1113 CTTGCTATCCCGCCTACGCGCTCTTTACGCCCAGTGATTCCGAGTAACGCTTGCACCCTC 1054 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||| ||||||||| |||||||| | || || Sbjct 1053 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCGTTAGATA 1002 >seq3726 Length=603 Score = 107 bits (118), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 83 CACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATG 142 ||||||||||| | |||||| | | |||| ||||| ||||| |||||||||| | Sbjct 152 CACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCTAGAAAGACAGTTTCAACGG 93 Query 143 C-AGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC-CTTCCCGCCTACACGCC 200 | || | ||||||||||| ||| || ||||||||| ||| |||||| | | || Sbjct 92 CGAGACG--GGGTTGAGCCCCGTCGTTTGACCGCTGACTTGCACTTTCCGCCTGCGCACC 35 Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGC 232 ||||| ||||||||||||||||||||||| || Sbjct 34 CTTTAAACCCAATAAATCCGGATAACGCTCGC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828768855509