Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq3356 102 6e-20 >seq3356 Length=837 Score = 102 bits (112), Expect = 6e-20 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCA-TTCATAGCCACCGGATCACTATGACCT 59 || |||||||||||||||||||||| | ||| || ||| |||||||||||||| | ||| Sbjct 376 TAGCTTTTATCCGTTGAGCGATGGCAATCCCACTTTATA-CCACCGGATCACTAAGTCCT 318 Query 60 GCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTA 119 |||||| | |||||| || || | | ||||| ||| || | ||| |||| |||| || Sbjct 317 ACTTTCGTACCTGCTCCAGCCGTCGGTGTCGCAGTCAGGCTCCCTTCTGCCTTTGCGCTC 258 Query 120 TCACTACGATTTCCGACC 137 || | | ||||||||| Sbjct 257 TCCGAATGGTTTCCGACC 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351987199300