Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq3356 96.9 3e-18 seq3187 78.8 9e-13 >seq3356 Length=837 Score = 96.9 bits (106), Expect = 3e-18 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||| | ||| | ||||||||||||||| | ||| |||||| ||||| Sbjct 364 GTTGAGCGATGGCAATCCCACTTTATACCACCGGATCACTAAGTCCTACTTTCGTACCTG 305 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||| ||||||| | ||||||||| || ||| |||| |||| || || | | | || Sbjct 304 CTCCAGCCGTCGGTGTCGCAGTCAGGCTCCCTTCTGCCTTTGCGCTCTCCGAATGGTTTC 245 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | || ||||| | || |||||| || Sbjct 244 CGACCATTCTGAGGGAACCTTTGAGCGCCTCCGATA 209 >seq3187 Length=1114 Score = 78.8 bits (86), Expect = 9e-13 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 34 GGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGT 93 ||||||||||| | ||||| ||||||||||||| | |||| |||| |||| || Sbjct 426 GGCCCTTCCATGCGGAACCGCCGGATCACTATGCTCAAGTTTCCTTCCTGTTCGACATGT 485 Query 94 CACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||||||||||||| |||||||||||||||| Sbjct 486 TTGTCTCGCAGTCAAGCGCCCTTATGCCATTGCACT 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473582203148