Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3356 315 1e-83 >seq3356 Length=837 Score = 315 bits (348), Expect = 1e-83 Identities = 235/274 (86%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||||||||||| |||||||| || ||| ||| ||| | Sbjct 710 GAGGGGGGCTTCACGCTTAGATGCCTTCAGCGTTTATCCCTGCCGGACTCGGCTACCCTG 651 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | || |||| | |||| |||||||| | ||| |||||||||||||||||||||| Sbjct 650 CCGTGGCGTTGGTCGC-CAACAGGTGCACCGGCGGTCCGTCCATCCCGGTCCTCTCGTAC 592 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 |||||||||||||||||| || |||| |||| || |||||||||||||||||||||| | Sbjct 591 TAAGGACAGCTCCTCTCAGATATCCTGCGCCTGCGCCGGATAGGGACCGAACTGTCTCAC 532 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 531 GACGTTCTGAACCCAGCTCGCGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGGACC 472 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||||||||||| || |||||||||||| Sbjct 471 GAATTCAGCCCCAGGATGCGATGAGCCGACATCG 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780770659244