Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2930 241 3e-61 >seq2930 Length=1850 Score = 241 bits (266), Expect = 3e-61 Identities = 305/415 (73%), Gaps = 26/415 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| ||||| ||||| || | |||||||| | ||||| ||||| || | |||||| Sbjct 973 TTTACAATCCGAAAACCTTCATCCTCCACGCGGCGTTGCTGCTTCAGGGTTTCCCCCATT 914 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 GAGCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 854 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | | | ||| |||||||| || | || || | |||| |||| ||||||||| | ||| Sbjct 853 GTCCGTTCACCCTCTCAGGCCGGATACCCGTCATAGCCTTGGTGAGCCATTACCTCACCA 794 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 || |||| || | | || | ||| |||| || | || | |||| | | || Sbjct 793 ACAAGCTGATAGGACATAGGCTGATCTCATAGCGAAA------AACTTTCCCC-CGTAGG 741 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || ||| | |||||| || |||||||| ||| ||||| | || ||||| Sbjct 740 ------GA--GTATCCAGTATTAATCATCGTTTCCAATGGCTATCCTAGACTATGAGGCA 689 Query 305 -GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT----GCT 359 | || | |||||||||||||| ||||||| || | |||||||| ||| Sbjct 688 CATAACCTATGCATTACTCACCCGTGCGCCACTAATCCAC-TTCTAGCAAGCTAAAAGCT 630 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | |||||||||||||||| |||||| |||||||||||||| |||||| Sbjct 629 TC-----ATCGTTCGACTTGCATGTATTAGGCACGCCGCCAGCGTTCACTCTGAG 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222352583104