Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2930 320 4e-85 seq3238 96.9 8e-18 seq3726 77.0 8e-12 >seq2930 Length=1850 Score = 320 bits (354), Expect = 4e-85 Identities = 308/396 (78%), Gaps = 2/396 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| || Sbjct 1014 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTACTCG 1073 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| ||||||||||||| | ||||||| || | |||||||| |||||| |||||| Sbjct 1074 GAATCACTGGGCGTAAAGAGCGCGTAGGCGGGATAGCAAGTCAGATGTGAAATCCTATGG 1133 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || |||| | ||||| |||||||||| ||||||| |||| || | ||||||| Sbjct 1134 CTTAACCATAGAACTGCATTTGAAACTGTTATTCTAGAGTATGGGAGAGGTAGGTGGAAT 1193 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 || | |||||| ||| |||| |||||| || | |||||| || | ||||||||| | | Sbjct 1194 TCTTGGTGTAGGGGTAAAATCCGTAGAGATCAAGAGGAATACTCATTGCGAAGGCGACCT 1253 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||| || |||||||| |||| || |||||||||||||||||||||||||||||||||| Sbjct 1254 GCTAGAACATAACTGACGCTGATGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1313 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 ||| | |||||||||||| |||| ||| | || || | | || | || Sbjct 1314 TGGNNNNNNNNNNC-TAAACGATGAATGCTAGTTGTTGTGGAGCTTGTCT-CTGCAGTAA 1371 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||| |||||| |||| ||||| ||||||||||| Sbjct 1372 TGCAGCTAACGCATTAAGCATTCCGCCTGGGGAGTA 1407 >seq3238 Length=1001 Score = 96.9 bits (106), Expect = 8e-18 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 110 AAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAG 169 ||||| | ||||||||| ||| ||||||| |||||||||| ||||||| || | Sbjct 478 AAGTCTGGAGTGAAAGGCAGGGGCCCAACCCCTGGACTGCTTTGGAAACTGTGTAACTGG 537 Query 170 AGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCG 205 |||||||||| || |||||||||||||||||||||| Sbjct 538 AGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCG 573 >seq3726 Length=603 Score = 77.0 bits (84), Expect = 8e-12 Identities = 109/151 (72%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCT-TAAGTCAGA 117 || ||||||||||||| ||| |||| ||||||||||| ||| || | ||||||| Sbjct 3 GCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAAGTGCAAGTCAGC 62 Query 118 GGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG 177 ||| ||| | |||||||||||| | || ||||||||| |||||||| | Sbjct 63 GGTCAAACGACGGGGCTCAACCCCGTCTC-GCCGTTGAAACTGTCTTTCTAGAGTGAGCG 121 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTG 208 || | | | ||||| | | ||||||||||| Sbjct 122 AGAAGTATGCGGAATGCGTGGTGTAGCGGTG 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203153327872