Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1507 145 2e-32 seq2774 98.7 3e-18 seq1007 86.0 2e-14 seq19 77.0 1e-11 seq2261 75.2 4e-11 >seq1507 Length=19912 Score = 145 bits (160), Expect = 2e-32 Identities = 143/182 (79%), Gaps = 12/182 (7%) Strand=Plus/Minus Query 208 GTAGTGGTATTTCACT-----TGCGCCGAAACGGCTCCCACTTATTCTACACCTCTC--- 259 |||||||||||||||| | | ||| | ||| |||||| ||||||| || Sbjct 3399 GTAGTGGTATTTCACTGTTGATTCAGGGAATCT--TCCAACTTATGCTACACCCTTCCAT 3342 Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 || || |||||| ||||| ||||||||||||||||||| | |||||||||| ||||| Sbjct 3341 AACTC--TTCACAGAGTCGAACTAGAGTCAAGCTCAACAAGATCTTCTTTCCTCGCTGTA 3284 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 | |||||| |||| |||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 3283 TTTTCCAAGCTCGTTGCCTTCGCTGTAATTTCGCTGGATAGTAGATAGGGACAGTGGGAA 3224 Query 380 TC 381 || Sbjct 3223 TC 3222 >seq2774 Length=2634 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||||||||| | ||||||| ||| |||| |||||||||||| ||||||||| || ||| Sbjct 1957 ATGACGAGGATTCTGGCTACATTACGAGACTCATAGTTACTCGTGCCGTTTACTCGAGCT 1898 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 || |||||||| ||| ||| | |||| |||||| ||||||||| Sbjct 1897 TGTCTGAATTTCATCAATTTAATGCTCAGGGCACTGAACAGAAATCA 1851 >seq1007 Length=34332 Score = 86.0 bits (94), Expect = 2e-14 Identities = 66/76 (87%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA-CTAGAGTCAAGCTC- 294 || |||||||| |||||||| ||| | | |||||| ||||||| |||||||||||||| Sbjct 11544 CTTCCACTTATGCTACACCTTTCATGACTCTTCACAGAGTCGGAACTAGAGTCAAGCTCC 11603 Query 295 AACAGGGTCTTCTTTC 310 |||||||||||||||| Sbjct 11604 AACAGGGTCTTCTTTC 11619 >seq19 Length=197720 Score = 77.0 bits (84), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 6/114 (5%) Strand=Plus/Minus Query 208 GTAGTGGTATTTCACT--TGCGCC--GAAACGGCTCCCACTTATTCTACACCTCTCAAGT 263 |||||||||||||||| || | |||| ||| ||||| | |||||||| ||| Sbjct 99462 GTAGTGGTATTTCACTGTTGATTCAGGAAAT--CTCTCACTTGTGCTACACCTTTCATAA 99405 Query 264 CATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 317 | |||| | |||| |||||||||||| |||||||| |||| ||| ||||||| Sbjct 99404 CTCTTCAAAGAGTCAAACTAGAGTCAAGTTCAACAGGATCTTTTTTTCCCGCTG 99351 >seq2261 Length=7601 Score = 75.2 bits (82), Expect = 4e-11 Identities = 78/98 (80%), Gaps = 7/98 (7%) Strand=Plus/Plus Query 208 GTAGTGGTATTTCACT--TGCGCC--GAAACGGCTCCCACTTATTCTACACCTCTCAAGT 263 |||||||||||||||| || | | || ||||||||||| |||||||| ||| | Sbjct 3589 GTAGTGGTATTTCACTGTTGATTCAGGGAAT--CTCCCACTTATGCTACACCTTTCATGA 3646 Query 264 CATTTCACAAAGTCGG-ACTAGAGTCAAGCTCAACAGG 300 | |||||| |||||| |||||||||||| |||||||| Sbjct 3647 CTCTTCACAGAGTCGGAACTAGAGTCAAGTTCAACAGG 3684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635136570592