Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3187 347 4e-93 seq3356 161 3e-37 >seq3187 Length=1114 Score = 347 bits (384), Expect = 4e-93 Identities = 422/571 (74%), Gaps = 33/571 (6%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||||||||||||| ||||| ||| || ||||| | | | ||||| Sbjct 477 TCGACATGTTTGTCTCGCAGTCAAGCGCCCTTATGCCATTGCACTCTGCGGCCGGTTGCC 536 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | ||||||| |||||| || ||||||||||| ||| ||||| | ||| |||||| Sbjct 537 AATCGGCCTGAGGGCACCTTTAGGAGCCTCCGTTACGCTTTTGGAGG-CGACCACCCCAG 595 Query 121 TTAAACTACCCACCAGGCACTGTCCCC--AACCC-AGATCATGGGCCAAGGTTAGATATC 177 | ||||||||||||| ||| ||||| | ||| | ||| |||||| | | Sbjct 596 TCAAACTACCCACCAAGCAGTGTCCTCTCAACACGAGA------------GTTAGAGACC 643 Query 178 CACTACGGTCAGAGTG-GTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCA 236 | || | ||| || |||||||||||||| |||| | || ||| |||| |||| ||| Sbjct 644 AAATATG-TCAAGGTCAGTATTTCAACAACGGCTCCCCGACAACTGGCGTCGCCGGCTCA 702 Query 237 TAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG 296 | | |||| |||||||||||| | ||| | || | | ||||| ||| |||| Sbjct 703 TTGCCTCCTGACTATCCTACACATGACATACCCGGTCACAGTGCTAAGCTGCAGTAAAGG 762 Query 297 TCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | |||||||||||||||| | ||| | || ||||||| || |||| ||||||| Sbjct 763 TTCACGGGGTCTTTTCGTCCCGTTGCGGGTAATCGGCATCTTCACCGATACTACAATTTC 822 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 |||| | |||||||||||| | || |||| |||||||||||||||||||||| Sbjct 823 ACCGAGTTCATGGTTGAGACAGTGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTT 882 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 883 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGG 942 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTC--ACGAGTCCTCTTAACCTTCCA 533 ||||| || ||| | | | ||||| || ||| ||||||||||| Sbjct 943 CTTCACTT------------CACTGCTTCGATTGCTCTGACAGCTCCGCTTAACCTTCCG 990 Query 534 GCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||| ||||| | ||||||| || Sbjct 991 GCACCGGGCAGGTGTCAGGCTGTATACCGCG 1021 >seq3356 Length=837 Score = 161 bits (178), Expect = 3e-37 Identities = 213/291 (73%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 || ||||||||| |||||||| ||| || | ||| || || || || |||| |||| Sbjct 292 GTGTCGCAGTCAGGCTCCCTTCTGCCTTTGCGCTCTCCGAATGGTTTCCGACCATTCTGA 233 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 ||||||||||| ||||||||| ||| ||| ||| ||| ||||||||||| ||||| ||| Sbjct 232 GGGAACCTTTGAGCGCCTCCGATACCCTTTCGGA-GGCGACCGCCCCAGTCAAACTCCCC 174 Query 132 ACCAGGCACTGTCCCCAACCCAG-ATCATGGGCCAAGGTTAGATATCCACTACGGTCAGA 190 |||| || |||||| | | | ||| | | ||||||| | ||| ||| | || Sbjct 173 GCCAGACATTGTCCCGGATCAGGCTTCACTGATCTCGGTTAGAAACCCAGTACTGCAAGG 114 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCA--TCATAGTCTCCCACC 248 ||||||| ||||| || ||||| | ||| |||| || | ||| || |||||||| Sbjct 113 GTGGTATCCCAACACCGGCTCCATTAAGACTGGCGT--CCTAATCTCAAAGCCTCCCACC 56 Query 249 TATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||| ||| || |||||| | ||| || |||||| ||| ||| ||| Sbjct 55 TATCCTGTACATACAGCACCGGGTCCCAGTATCAAGCTGGAGTAAAGCTCC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702333963904