Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2930 174 3e-41 >seq2930 Length=1850 Score = 174 bits (192), Expect = 3e-41 Identities = 204/279 (73%), Gaps = 20/279 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||||||| | || ||| || Sbjct 1042 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCGTTAGATACCGTCA------------- 996 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||| || | ||||| ||||||||||||| | |||||||||||| ||||| Sbjct 995 ------TTATCTTCTCTAACAAAAGGAGTTTACAATCCGAA-AACCTTCATCCTCCACGC 943 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| ||||| | || ||||||| ||||||||| ||||||||||||||||| Sbjct 942 GGCGTTGCTGCTTCAGGGTTTCCCCCATTGAGCAATATTCCCTACTGCTGCCTCCCGTAG 883 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| |||||||||||||||||||| |||| | | |||||||| | || || | Sbjct 882 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGTCCGTTCACCCTCTCAGGCCGGATACCCGT 823 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||| || |||| ||| ||||| | || || | || || Sbjct 822 CATAGCCTTGGTGAGCCATTACCTCACCAACAAGCTGAT 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068758541248