Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2907 201 2e-49 seq1077 145 1e-32 seq59 96.9 6e-18 >seq2907 Length=2095 Score = 201 bits (222), Expect = 2e-49 Identities = 202/256 (79%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 1739 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 1681 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------CCAGCC-ACCAA 126 | |||| |||| | || | |||||||||||||| | ||| || || Sbjct 1680 A-CTTCATGCGGCTAAACACCGCTTGTCCCTCTAAGAAGTTGTCTGGACTAGCGTACGAA 1622 Query 127 C-CATAG-TCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 ||| || | |||||||| ||| || |||||| ||||||||||||| ||| Sbjct 1621 TACATTTATCCAGCATAAACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAAC 1562 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct 1561 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAA 1502 Query 243 GAGCTATCAATCTGTC 258 ||||| ||||| |||| Sbjct 1501 GAGCTTTCAATATGTC 1486 >seq1077 Length=19286 Score = 145 bits (160), Expect = 1e-32 Identities = 194/264 (73%), Gaps = 23/264 (9%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||| |||| ||| | |||||||||||||||||||||||||||||| Sbjct 16448 TCCTTCAGTGTAGCGCGTGTGCAGCCGTGGACATCTAAGGGCATCACAGACCTGTTATTG 16389 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------CCAGCC- 121 | |||| |||| |||| | || | |||||||||||||| | ||| Sbjct 16388 C-TCAA-CTTCATGCGGCTAAACACCGCTTGTCCCTCTAAGAAGTTGTCTGGACTAGCGT 16331 Query 122 ACCAAC-CATAGTCGATG------GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 || || || || | | ||| | | | | || || |||||||||||| Sbjct 16330 ACGAATACACTGTTCCTTCACAAAGTGCTTTGTTG---GCTACAGTTTCGTTCGTTATCA 16274 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||| || ||||||||||| || || | ||||||||||||||||||||||| ||| ||| Sbjct 16273 GAATAAAGCAGACAAATCAATCTAC-ATCTAAGAACGGCCATGCACCACCAACCACCGAA 16215 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||| ||||| |||| Sbjct 16214 TCATGAAAGAGCTTTCAATATGTC 16191 >seq59 Length=128137 Score = 96.9 bits (106), Expect = 6e-18 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 || ||| |||||| ||||||||| ||| ||||||||||||||| | ||||||| ||| | Sbjct 90763 CGAAATAAACCAGGCAAATCACTTCACAAACTAAGAACGGCCACGTACCACCAACCACCG 90822 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 ||||| | ||||||| |||||||||| Sbjct 90823 AATCATGGAAGAGCTTTCAATCTGTC 90848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796755399618