Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3101 196 7e-48 seq3054 196 7e-48 seq2977 196 7e-48 seq1303 196 7e-48 seq1071 196 7e-48 seq761 168 1e-39 seq1508 150 3e-34 seq2784 118 2e-24 >seq3101 Length=397525 Score = 196 bits (216), Expect = 7e-48 Identities = 185/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 358427 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 358370 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 358369 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAACGGGTT 358310 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 358309 ACCAATACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 358251 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 358250 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 358205 >seq3054 Length=284887 Score = 196 bits (216), Expect = 7e-48 Identities = 185/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 66162 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 66219 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 66220 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAACGGGTT 66279 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 66280 ACCAATACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 66338 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 66339 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 66384 >seq2977 Length=81633 Score = 196 bits (216), Expect = 7e-48 Identities = 185/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 18001 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 17944 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 17943 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAACGGGTT 17884 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 17883 ACCAATACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 17825 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 17824 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 17779 Score = 138 bits (152), Expect = 2e-30 Identities = 149/192 (78%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| |||| ||||||||| | ||| || |||| ||| Sbjct 18769 GTACAAAGGGCAGGGACGTAATCAACGTGAGC-TGATGACTCACACTTCCTGGGAA-TTC 18712 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 18711 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 18652 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | ||| | || | || | | | | ||||||||||||||||| Sbjct 18651 ACCAATACCTTTCGGCAATGGTCACAG-CACGCTTATTCCTCCAGTGTAGCGCGCGTGCA 18593 Query 180 GCCCAGAACATC 191 |||| ||||||| Sbjct 18592 GCCCTGAACATC 18581 >seq1303 Length=4005 Score = 196 bits (216), Expect = 7e-48 Identities = 185/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 2326 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 2269 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 2268 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAACGGGTT 2209 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 2208 ACCAATACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 2150 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 2149 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 2104 >seq1071 Length=5615 Score = 196 bits (216), Expect = 7e-48 Identities = 185/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 1041 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 1098 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 1099 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAACGGGTT 1158 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 1159 ACCAATACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 1217 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 1218 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 1263 >seq761 Length=893878 Score = 168 bits (186), Expect = 1e-39 Identities = 177/226 (78%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| ||||||| ||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 186375 GTACAAGGGGCAGGAACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 186432 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| | ||||||||| | ||||| |||| | | | |||||| | || Sbjct 186433 CTCGTTCAAGGGAAGTAATTGCAATTCCCGATCCCAATCATGGAGGATTTTCAAGGGGTT 186492 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| ||| | || | || ||| | | ||||||||||||||||| Sbjct 186493 ACCAATACCTTTCGGCAGTGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 186551 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | ||| |||||||||||||||||||||||||| ||||| || Sbjct 186552 GCCCTGGACAACTAAGGGCATCACAGACCTGTTATTG-CTCAACCT 186596 >seq1508 Length=14854 Score = 150 bits (166), Expect = 3e-34 Identities = 168/218 (77%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 6 AAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGT 65 |||||||| |||||| ||| || |||| ||| |||| | ||| |||||||| |||||| Sbjct 11419 AAGGGCAGAGACGTAATCAGCGTAAGCT-GATAACTCACACTTGTTAGGAATT-CCTCGT 11476 Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCG 124 | ||| || ||||||||| | ||||| |||||| | | |||||| || ||||| Sbjct 11477 TCAAGGGGAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGAGGTTACCAA 11536 Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCA 184 |||| ||||| | ||| | || | || ||| | | || |||||||||| ||| ||| Sbjct 11537 TACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAATGTAGCGCGCATGCAGCCTT 11595 Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 | |||||||||||||||||||||||||||||| ||||| Sbjct 11596 GGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 11632 >seq2784 Length=632769 Score = 118 bits (130), Expect = 2e-24 Identities = 130/168 (77%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| |||| ||||||||| | ||||||||||| ||| Sbjct 277630 GTACAAAGGGCAGGGACGTAATCAACGTGAGC-TGATGACTCACACTTACTAGGAA-TTC 277687 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 277688 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAACGGGTT 277747 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 ||| |||| ||||| | ||| | || | || ||| | | |||||| Sbjct 277748 ACCAATACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGT 277794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751833486755