Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3054 154 3e-35 seq1303 154 3e-35 seq3101 147 4e-33 seq1071 129 1e-27 seq761 118 2e-24 >seq3054 Length=284887 Score = 154 bits (170), Expect = 3e-35 Identities = 185/246 (75%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||| | | || ||| | || |||||| ||||||| Sbjct 67045 TTTACTTTGAAAAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 66986 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||||||||||| | |||||||||||||||||||| | | | ||||| |||| Sbjct 66985 ATAATAGAATAGGATCT-CGGTTCTATTTTGTTGGTTTTCTGATCTGAGATAATGGTTAA 66927 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA-TTTATTG 252 ||||| | |||||| | |||| || |||||||||||||||||| || | Sbjct 66926 GAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGACCGTAGCG 66867 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | ||||||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 66866 -AGACGTCCGACTGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 66809 Query 313 TAGGGG 318 || || Sbjct 66808 CAGAGG 66803 >seq1303 Length=4005 Score = 154 bits (170), Expect = 3e-35 Identities = 185/246 (75%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||| | | || ||| | || |||||| ||||||| Sbjct 1443 TTTACTTTGAAAAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 1502 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||||||||||| | |||||||||||||||||||| | | | ||||| |||| Sbjct 1503 ATAATAGAATAGGATCT-CGGTTCTATTTTGTTGGTTTTCTGATCTGAGATAATGGTTAA 1561 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA-TTTATTG 252 ||||| | |||||| | |||| || |||||||||||||||||| || | Sbjct 1562 GAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGACCGTAGCG 1621 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | ||||||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 1622 -AGACGTCCGACTGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 1679 Query 313 TAGGGG 318 || || Sbjct 1680 CAGAGG 1685 >seq3101 Length=397525 Score = 147 bits (162), Expect = 4e-33 Identities = 184/246 (75%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAA-AAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||| ||||||||||| | | || ||| | || |||||| ||||||| Sbjct 357544 TTACTTTGAAATAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 357603 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||||||||||| | |||||||||||||||||||| | | | ||||| |||| Sbjct 357604 ATAATAGAATAGGATCT-CGGTTCTATTTTGTTGGTTTTCTGATCTGAGATAATGGTTAA 357662 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA-TTTATTG 252 ||||| | |||||| | |||| || |||||||||||||||||| || | Sbjct 357663 GAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGACCGTAGCG 357722 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | ||||||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 357723 -AGACGTCCGACTGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 357780 Query 313 TAGGGG 318 || || Sbjct 357781 CAGAGG 357786 >seq1071 Length=5615 Score = 129 bits (142), Expect = 1e-27 Identities = 180/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||| | | || ||| | || |||||| ||||||| Sbjct 1911 TTTACTTTGAAAAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 1852 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| |||||||| | || ||||||||||||||||| | | | ||||| |||| Sbjct 1851 ATAACAGAATAGGGTCT-CGATTCTATTTTGTTGGTTTTCTGATCTGAGATAATGGTTAA 1793 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT-GGATTTATTG 252 |||||| | | ||||| | |||| || ||||||||||||||| || || | Sbjct 1792 GAGGGATGGAC-GGGGTATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGGCCGTAGCG 1734 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | | ||||||||||| || ||||| |||| ||||||||| | |||||||||| Sbjct 1733 -AGTCGTCCGACTGCGAAAGCATTTGCCAAGAATGTCTTCATTAATTA-AGAACGAAAGT 1676 Query 313 TAGGGG 318 || || Sbjct 1675 CAGAGG 1670 >seq761 Length=893878 Score = 118 bits (130), Expect = 2e-24 Identities = 177/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||| | || ||| | || |||||| |||||| Sbjct 187257 TTTACTTTGAAAAAATTAGAGTGCCTCACGCGGGCTTATGTCTGAATACTCGTACATGGA 187198 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| ||||||| | |||||||||||||| | ||| | | | ||||| |||| Sbjct 187197 ATAATACAATAGGATCT-CGGTTCTATTTTGTCGATTTTCTGATCTGAGATAATGGTTAA 187139 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT-GGATTTATTG 252 |||||| | |||||| | ||| || ||||||||||||||| || || | Sbjct 187138 GAGGGATGGACGGGGGCATTCCTATCGCTGCGTGAGAGGTGAAATTCTTGGGCCGTAGCG 187079 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | |||||| | || || ||||| |||| ||||||||||| |||||||||| Sbjct 187078 -AGACGTCCGACTGCGCAGGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 187021 Query 313 TAGGGG 318 || || Sbjct 187020 CAGAGG 187015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914990812736