Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3054 89.7 5e-16 seq1303 89.7 5e-16 seq3101 80.6 3e-13 seq1071 75.2 1e-11 seq761 73.4 4e-11 >seq3054 Length=284887 Score = 89.7 bits (98), Expect = 5e-16 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||||||||||||||||||| | | | || ||| | || |||||| |||||| Sbjct 67045 TTTACTTTGAAAAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 66986 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||||||||||||| | |||||||||||||| ||||| | || | ||||| | | Sbjct 66985 ATAATAGAATAGGATCT-CGGTTCTATTTTGTTGGTTT-TCTGATCTGAGATAATGGTTA 66928 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 66927 AGAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGA 66875 >seq1303 Length=4005 Score = 89.7 bits (98), Expect = 5e-16 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||||||||||||||||||| | | | || ||| | || |||||| |||||| Sbjct 1443 TTTACTTTGAAAAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 1502 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||||||||||||| | |||||||||||||| ||||| | || | ||||| | | Sbjct 1503 ATAATAGAATAGGATCT-CGGTTCTATTTTGTTGGTTT-TCTGATCTGAGATAATGGTTA 1560 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 1561 AGAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGA 1613 >seq3101 Length=397525 Score = 80.6 bits (88), Expect = 3e-13 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAA-AAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||||||||| ||||||||| | | | || ||| | || |||||| |||||| Sbjct 357544 TTACTTTGAAATAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 357603 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||||||||||||| | |||||||||||||| ||||| | || | ||||| | | Sbjct 357604 ATAATAGAATAGGATCT-CGGTTCTATTTTGTTGGTTT-TCTGATCTGAGATAATGGTTA 357661 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 357662 AGAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGA 357714 >seq1071 Length=5615 Score = 75.2 bits (82), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||||||||||||||||||| | | | || ||| | || |||||| |||||| Sbjct 1911 TTTACTTTGAAAAAATTAGAGTGCTTCACGCGGGCTTATGTCTGAATACTCGTGCATGGA 1852 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| |||||||| | || ||||||||||| ||||| | || | ||||| | | Sbjct 1851 ATAACAGAATAGGGTCT-CGATTCTATTTTGTTGGTTT-TCTGATCTGAGATAATGGTTA 1794 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 | | |||| | | ||||| | |||| || | ||||||||||||||| Sbjct 1793 AGAGGGATGGAC-GGGGTATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGG 1743 >seq761 Length=893878 Score = 73.4 bits (80), Expect = 4e-11 Identities = 121/172 (70%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||||||||||||||||||| | | || ||| | || |||||| |||||| Sbjct 187257 TTTACTTTGAAAAAATTAGAGTGCCTCACGCGGGCTTATGTCTGAATACTCGTACATGGA 187198 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||||| ||||||| | |||||||||||||| | ||| | || | ||||| | | Sbjct 187197 ATAATACAATAGGATCT-CGGTTCTATTTTGTCGATTT-TCTGATCTGAGATAATGGTTA 187140 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 | | |||| | |||||| | ||| || | ||||||||||||||| Sbjct 187139 AGAGGGATGGACGGGGGCATTCCTATCGCTGCGTGAGAGGTGAAATTCTTGG 187088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511886629280