Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3101 212 1e-52 seq3054 212 1e-52 seq2977 212 1e-52 seq1303 212 1e-52 seq1071 212 1e-52 seq761 179 7e-43 seq1508 152 1e-34 seq2784 125 1e-26 >seq3101 Length=397525 Score = 212 bits (234), Expect = 1e-52 Identities = 205/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| |||||| ||| |||||||||||||||| Sbjct 358172 CTTCTTAGAGGGACAAGCGGTGTTCAGCCGCATGAAGTT-GAG-CAATAACAGGTCTGTG 358229 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || || || | | | | Sbjct 358230 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACACTGGAGGAATCAGCGTGCTG-TAA 358288 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | |||| ||||| | ||||| | | ||| || |||| | ||||| | | |||| Sbjct 358289 CCATTGCCGAAAGGTATTGGTAACCCGTTGAAAATCCTCCGTGATCGGGATCGGGAATTG 358348 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| |||||||||| ||||||||| | | ||||||||| | |||||||| Sbjct 358349 CAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 358408 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 358409 ACGTCCCTGCCCTTTGTA 358426 >seq3054 Length=284887 Score = 212 bits (234), Expect = 1e-52 Identities = 205/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| |||||| ||| |||||||||||||||| Sbjct 66417 CTTCTTAGAGGGACAAGCGGTGTTCAGCCGCATGAAGTT-GAG-CAATAACAGGTCTGTG 66360 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || || || | | | | Sbjct 66359 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACACTGGAGGAATCAGCGTGCTG-TAA 66301 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | |||| ||||| | ||||| | | ||| || |||| | ||||| | | |||| Sbjct 66300 CCATTGCCGAAAGGTATTGGTAACCCGTTGAAAATCCTCCGTGATCGGGATCGGGAATTG 66241 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| |||||||||| ||||||||| | | ||||||||| | |||||||| Sbjct 66240 CAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 66181 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 66180 ACGTCCCTGCCCTTTGTA 66163 >seq2977 Length=81633 Score = 212 bits (234), Expect = 1e-52 Identities = 205/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| |||||| ||| |||||||||||||||| Sbjct 17746 CTTCTTAGAGGGACAAGCGGTGTTCAGCCGCATGAAGTT-GAG-CAATAACAGGTCTGTG 17803 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || || || | | | | Sbjct 17804 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACACTGGAGGAATCAGCGTGCTG-TAA 17862 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | |||| ||||| | ||||| | | ||| || |||| | ||||| | | |||| Sbjct 17863 CCATTGCCGAAAGGTATTGGTAACCCGTTGAAAATCCTCCGTGATCGGGATCGGGAATTG 17922 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| |||||||||| ||||||||| | | ||||||||| | |||||||| Sbjct 17923 CAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 17982 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 17983 ACGTCCCTGCCCTTTGTA 18000 Score = 140 bits (154), Expect = 6e-31 Identities = 145/189 (77%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||| |||| ||||||||||||||||| || | || | | | ||| | |||| Sbjct 18581 GATGTTCAGGGCTGCACGCGCGCTACACTGGAGGAATAAGCGTGCTG-TGACCATTGCCG 18639 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | ||||| | | ||| || |||| | ||||| | | |||||||||||| Sbjct 18640 AAAGGTATTGGTAACCCCTTGAAAATCCTCCGTGATCGGGATCGGGAATTGCAATTATTT 18699 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 | ||| |||||||||| || || ||| | | ||||||||| | ||||||||||||||||| Sbjct 18700 CCCTTGAACGAGGAATTCCCAGGAAGTGTGAGTCATCAGCTCACGTTGATTACGTCCCTG 18759 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 18760 CCCTTTGTA 18768 >seq1303 Length=4005 Score = 212 bits (234), Expect = 1e-52 Identities = 205/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| |||||| ||| |||||||||||||||| Sbjct 2071 CTTCTTAGAGGGACAAGCGGTGTTCAGCCGCATGAAGTT-GAG-CAATAACAGGTCTGTG 2128 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || || || | | | | Sbjct 2129 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACACTGGAGGAATCAGCGTGCTG-TAA 2187 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | |||| ||||| | ||||| | | ||| || |||| | ||||| | | |||| Sbjct 2188 CCATTGCCGAAAGGTATTGGTAACCCGTTGAAAATCCTCCGTGATCGGGATCGGGAATTG 2247 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| |||||||||| ||||||||| | | ||||||||| | |||||||| Sbjct 2248 CAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 2307 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2308 ACGTCCCTGCCCTTTGTA 2325 >seq1071 Length=5615 Score = 212 bits (234), Expect = 1e-52 Identities = 205/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| |||||| ||| |||||||||||||||| Sbjct 1296 CTTCTTAGAGGGACAAGCGGTGTTCAGCCGCATGAAGTT-GAG-CAATAACAGGTCTGTG 1239 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || || || | | | | Sbjct 1238 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACACTGGAGGAATCAGCGTGCTG-TAA 1180 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | |||| ||||| | ||||| | | ||| || |||| | ||||| | | |||| Sbjct 1179 CCATTGCCGAAAGGTATTGGTAACCCGTTGAAAATCCTCCGTGATCGGGATCGGGAATTG 1120 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| |||||||||| ||||||||| | | ||||||||| | |||||||| Sbjct 1119 CAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 1060 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1059 ACGTCCCTGCCCTTTGTA 1042 >seq761 Length=893878 Score = 179 bits (198), Expect = 7e-43 Identities = 199/259 (77%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCG-ATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||| |||| | ||| | ||||| ||| || ||||| ||||||||||||||| Sbjct 186630 CTTCTTAGAAGGACAAGCGGTGTTCAGCCGCATG--AGGTTGAG-CAATAACAGGTCTGT 186574 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||| ||| | |||| ||||||||||||||||| || || || | | | Sbjct 186573 GATGCCCTTAGTTGTCCAGGGCTGCACGCGCGCTACACTGGAGGAATCAGCGTGCTG-TA 186515 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| |||| ||||| | ||||| | | ||| || | || | ||||| | | ||| Sbjct 186514 ACCACTGCCGAAAGGTATTGGTAACCCCTTGAAAATCCTCCATGATTGGGATCGGGAATT 186455 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||| | | ||| |||||||||| ||||||||| | | ||||||||| | ||||||| Sbjct 186454 GCAATTACTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGAT 186395 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||| ||||||| ||||| Sbjct 186394 TACGTTCCTGCCCCTTGTA 186376 >seq1508 Length=14854 Score = 152 bits (168), Expect = 1e-34 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||||||||| | ||| ||| |||||||||| | Sbjct 11632 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAAGGCTGCATGCGCGCTACATT 11574 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 | || || || | | | ||| | |||| ||||| | ||||| || | ||| || Sbjct 11573 GGAGGAATCAGCGTGCTG-TAACCATTGCCGAAAGGTATTGGTAACCTCTTGAAAATCCT 11515 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||| | ||||| | | |||||||||||| | ||| |||||||||| |||| ||| | Sbjct 11514 CCGTGATCGGGATCGGGAATTGCAATTATTCCCCTTGAACGAGGAATTCCTAACAAGTGT 11455 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 | || |||||| || |||||||||| |||||||| Sbjct 11454 GAGTTATCAGCTTACGCTGATTACGTCTCTGCCCTT 11419 >seq2784 Length=632769 Score = 125 bits (138), Expect = 1e-26 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| | |||| ||||| | ||||| | | ||| || |||| | ||||| | | ||| Sbjct 277769 ACCATTGCCGAAAGGTATTGGTAACCCGTTGAAAATCCTCCGTGATCGGGATCGGGAATT 277710 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | ||| |||||||||| ||||||||| | | ||||||||| | ||||||| Sbjct 277709 GCAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGAT 277650 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 277649 TACGTCCCTGCCCTTTGTA 277631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946983498496