Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3054 376 8e-102 seq1303 376 8e-102 seq761 331 3e-88 seq1071 327 3e-87 seq888 143 8e-32 seq2726 129 2e-27 seq1441 111 5e-22 >seq3054 Length=284887 Score = 376 bits (416), Expect = 8e-102 Identities = 387/500 (77%), Gaps = 6/500 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || | ||| | || || ||||| | |||||||||| Sbjct 67272 GTACCCATTCCGATAACCGGCCTCATA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 67330 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | || || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67331 CCTCATGCCGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 67390 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 67391 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 67450 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || |||||||||| |||||||| |||||| | |||| || | ||||||| | Sbjct 67451 GGCACATAAACTACCATCGACAGTTGATAAGGCAGACACTTGATAGACACGTCGCCGGTT 67510 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAA--GGAGCCCCGAAGGGCGTT 297 | | ||||||||| | || ||||||| || ||||||| | ||||| || | Sbjct 67511 CTGGACCATGCGATCAGCTACAGTTATTCAGAGTCACCAATTTACGGGCCGAAACCCGAT 67570 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGCT 356 | |||| |||||||| || | | | | | || |||| | ||| ||||||||||||| Sbjct 67571 TGGTTTTAATCTAATAGATGCGCTCGTCACAAAATCGGAGCTTTGGTGCATGTATTAGCT 67630 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||||| |||||||| |||| | | ||||| || | ||| ||| | || Sbjct 67631 CTAGAATTACCACAGTTATCCACGTAGGACATCAAGATCAAGTATATAATAGCTGTTATA 67690 Query 417 ATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||| ||||| |||||| || || || || |||||||||||||||||||| Sbjct 67691 ATGAGCCGTTCGCGGTTTCACCTTTAAAGGCCATTTGAACTTAGACATGCATGGCTTAGC 67750 Query 476 CTTTGAGACAAGCATATGAC 495 |||||||| |||||||| || Sbjct 67751 CTTTGAGATAAGCATATAAC 67770 >seq1303 Length=4005 Score = 376 bits (416), Expect = 8e-102 Identities = 387/500 (77%), Gaps = 6/500 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || | ||| | || || ||||| | |||||||||| Sbjct 1216 GTACCCATTCCGATAACCGGCCTCATA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 1158 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | || || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 CCTCATGCCGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1098 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 1097 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 1038 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || |||||||||| |||||||| |||||| | |||| || | ||||||| | Sbjct 1037 GGCACATAAACTACCATCGACAGTTGATAAGGCAGACACTTGATAGACACGTCGCCGGTT 978 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAA--GGAGCCCCGAAGGGCGTT 297 | | ||||||||| | || ||||||| || ||||||| | ||||| || | Sbjct 977 CTGGACCATGCGATCAGCTACAGTTATTCAGAGTCACCAATTTACGGGCCGAAACCCGAT 918 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGCT 356 | |||| |||||||| || | | | | | || |||| | ||| ||||||||||||| Sbjct 917 TGGTTTTAATCTAATAGATGCGCTCGTCACAAAATCGGAGCTTTGGTGCATGTATTAGCT 858 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||||| |||||||| |||| | | ||||| || | ||| ||| | || Sbjct 857 CTAGAATTACCACAGTTATCCACGTAGGACATCAAGATCAAGTATATAATAGCTGTTATA 798 Query 417 ATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||| ||||| |||||| || || || || |||||||||||||||||||| Sbjct 797 ATGAGCCGTTCGCGGTTTCACCTTTAAAGGCCATTTGAACTTAGACATGCATGGCTTAGC 738 Query 476 CTTTGAGACAAGCATATGAC 495 |||||||| |||||||| || Sbjct 737 CTTTGAGATAAGCATATAAC 718 >seq761 Length=893878 Score = 331 bits (366), Expect = 3e-88 Identities = 351/458 (77%), Gaps = 5/458 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||||||| | || || || ||| |||||||||||||||||||||||| Sbjct 187525 TATTTTTCGTCACTACCTCCTCATGCCGAGAGTGGATAATTTGCGCGCCTGCTGCCTTCC 187584 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 |||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||| Sbjct 187585 TTGGATGTGGTAGCCGTTTCTCAGGCTCACTCTCCGGAGTCGAACCCTTATTCTCCGTTA 187644 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 || || |||||||||||| || |||||||||| |||||||| |||||| | ||| Sbjct 187645 CCTTTTACAACCATGGTAGGCACATAAACTACCATCGACAGTTGATAAGGCAGACACTTG 187704 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAA-- 279 | || | ||||||| || | |||||||| | || ||||||| || ||||||| Sbjct 187705 ATAGACACGTCGCCGGTTCTGGATCATGCGATCAGCTACAGTTATTCAGAGTCACCAATT 187764 Query 280 GGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG-GGGT 338 | ||||| || | |||| |||||||| || ||| | | || ||| | | Sbjct 187765 TACGGGCCGAAACCCGACTGGTTTTAATCTAATAGATGCACTCGTCAGAAAATCGCAGCT 187824 Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 || | |||||||||||||||||||||||||| |||| || |||| | | ||||| Sbjct 187825 TTGTTGCATGTATTAGCTCTAGAATTACCACAATTATTCACGTAGGACATCAAGATCAAG 187884 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTT 457 || | ||| ||| | ||||||||| ||||| ||| || || || | | || |||| Sbjct 187885 TATATAATAGCTGTTATAATGAGCCGTTCGCGGTTCCACCTTTAAATGTCATTTGAACTT 187944 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 |||||||||||||||| |||||||| |||||||| || Sbjct 187945 AGACATGCATGGCTTAGCCTTTGAGATAAGCATATAAC 187982 >seq1071 Length=5615 Score = 327 bits (362), Expect = 3e-87 Identities = 375/499 (75%), Gaps = 5/499 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || | ||| | || || ||||| | |||||||||| Sbjct 2138 GTACCCATTCCGATAACCGGCCTCATA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 2196 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | || || || |||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 2197 CCTCATGCCGAGAGTGGGTAATTTGCGCACCTGCTGCCTTCCTTGGATGTGGTAGCTGTT 2256 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||| | ||||||||| |||| |||||||||||| | |||||| Sbjct 2257 TCTCAGGCTCCCTCTCCGCAGTCGAACCCTTATTCTCCGTTACCCGTTACAAACATGGTG 2316 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || |||||||||| |||||||| |||| | | |||| || | ||||| | | Sbjct 2317 GGCACATAAACTACCATCGACAGTTGATAAGGCAAACACTTGATAGACTCGTCGCCCGTT 2376 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAA--GGAGCCCCGAAGGGCGTT 297 | | ||||||||| | || ||||||| | ||||||| | ||||| || | Sbjct 2377 CTGGACCATGCGATCAGCTATAGTTATTCAAAGTCACCAATTTACGGGCCGAAACCCGAT 2436 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGCT 356 | |||| |||||||| || | | | | || ||| | ||| ||||||||||||| Sbjct 2437 TGGTTTTAATCTAATAGATGCGCTCGTCAGAAAACCGGAGCTTTGGTGCATGTATTAGCT 2496 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||| |||||||||||| || |||| | | ||||| || | ||| ||| | || Sbjct 2497 CTAGAACTACCACGGTTATTCACGTAGGATATCAAGATCAAGTATATAATAGCTGTTATA 2556 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476 ||||||| ||||| ||||||| || || || |||||||||||||||||||| | Sbjct 2557 ATGAGCCGTTCGCGGTTTCACCTTAAAGGCCATTTGAACTTAGACATGCATGGCTTAGCC 2616 Query 477 TTTGAGACAAGCATATGAC 495 ||||||| |||||||| || Sbjct 2617 TTTGAGATAAGCATATAAC 2635 >seq888 Length=126278 Score = 143 bits (158), Expect = 8e-32 Identities = 233/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 |||||||||||| || |||||||||| |||||||| |||||| | | || || | Sbjct 122139 ACCATGGTAGGCACATAAACTACCATCGACAGTTGATAAGGCAGACACTCGATAGACACT 122080 Query 232 TCGCCGGCTCAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAA--GGAGCCCCG 288 | ||||| || | |||||| || | || ||||||| | | ||||| | | ||| Sbjct 122079 TTGCCGGTTCTGGACCATGCAATCAGCTACAGTTATT-CGGGTAACCAATTGACGGGCCG 122021 Query 289 AAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCAT 347 || || | | |||| |||||||| || | | | | || |||| | ||| |||| Sbjct 122020 AAACCCGATTGGTTTTAATCTAATAGATGCGCTCGTCAGAAAATCGGAGCTTTGCTGCAT 121961 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 |||| ||||||||| || |||| |||||||| |||| | | ||||| || | ||| Sbjct 121960 GTATCAGCTCTAGAGTTGCCACAGTTATCCACGTAGGACATCAAGATCAAGTATATAATA 121901 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCA 466 ||| | ||||||||| ||||| ||| || || || || ||| || |||||||||| Sbjct 121900 GCTGTTATAATGAGCCGTTCGCGGTTGCACCTTTAAAGGCCACTTGAACCTAGACATGCA 121841 Query 467 TGGCTTAATCTTTGAGACAAGCATATGAC 495 ||||||| |||||||| || | ||| || Sbjct 121840 TGGCTTAGCCTTTGAGATAAACTTATAAC 121812 >seq2726 Length=15153 Score = 129 bits (142), Expect = 2e-27 Identities = 121/153 (79%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||||||||||||||||| |||||||| |||| | | ||||| || | Sbjct 15095 GCATGTATTAGCTCTAGAATTACCACAGTTATCCACGTAGGACATCAAGATCAAGTATAT 15036 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACA 462 ||| ||| | ||||||||| ||||| |||||| || || || || ||||||||| Sbjct 15035 AATAGCTGTTATAATGAGCCGTTCGCGGTTTCACCTTTAAAGGCCATTTGAACTTAGACA 14976 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 ||||||||||| |||||||| |||||||| || Sbjct 14975 TGCATGGCTTAGCCTTTGAGATAAGCATATAAC 14943 >seq1441 Length=6806 Score = 111 bits (122), Expect = 5e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || | ||| | || || ||||| | |||||||||| Sbjct 5212 GTACCCATTCCGATAACCGGCCTCATA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 5154 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | || || || |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 5153 CCTCATGCCGAGAGTGGGTAATTTGCGCGCTTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5094 Query 121 T 121 | Sbjct 5093 T 5093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510054767872