Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_032130.1 Length=1560 Score E Sequences producing significant alignments: (Bits) Value seq2916 807 0.0 >seq2916 Length=843511 Score = 807 bits (894), Expect = 0.0 Identities = 1049/1433 (73%), Gaps = 29/1433 (2%) Strand=Plus/Plus Query 120 CCGGAAATGCTTTTCT-AACTCCTGATAATCTTTCTTACTTGTTCTATTTCAGATGACGA 178 |||||||||| ||| | ||| | | | | | | ||||||| | ||||||||||||||| Sbjct 464915 CCGGAAATGCCTTTATTAACGTTTCACACTTTGTATTACTTGATTTATTTCAGATGACGA 464974 Query 179 CGATAGAGTACGTGCGTCAGCTTCCCTCGTACAAGATCGTGAAGTTCGCTAACCCGAGCG 238 ||||||| |||||||||| || || || || | || |||||| |||| || |||| Sbjct 464975 CGATAGAATACGTGCGTCGACTGCCTTCATATGAAATTGTGAAGACACCTAATCC-AGCG 465033 Query 239 ---ACGGTTTTGTTCGTGGAATCATCAATATACTGATGCCAGACCTATTGCCGAAAATCG 295 ||| | | ||||| ||||| ||||| ||||||| ||||||||||||||| | | Sbjct 465034 GATACGCATATC--CGTGGGATCATTAATATGTTGATGCCGGACCTATTGCCGAAACTTG 465091 Query 296 ATTTGTACACTCGAGGCATGTATAACGAAGCGCGCCATTACGACGCCTTCCGCAAATACG 355 || ||||||||||||||||| | |||| | | |||| || ||| ||| |||| Sbjct 465092 ATGAATACACTCGAGGCATGTACAGTGAAGAACTCAATTATACAGCGTTCTACAAGTACG 465151 Query 356 AACGACCAATCACAACCGAACTCGCCATCAAGGAACGACTCCTTTCGGACCCATACATAT 415 || | || ||||| || ||||| || ||||||||| ||||||||||||| | ||||||| Sbjct 465152 AAAGGCCGATCACGACTGAACTGGCTATCAAGGAAGCACTCCTTTCGGACTCCTACATAT 465211 Query 416 ATGCGGCGCGA---CACTTTGTTGAGGATGAATTACGCGATTCATTTACTGTGAACGCCA 472 | || | || ||| || || |||||| | ||||||||||| | ||| |||||| Sbjct 465212 ACGCCACTCGTTGTCAC---GTCGAAGATGAACTTCGCGATTCATTCTCAGTGGACGCCA 465268 Query 473 TCCCCATGAATTGTCTAGACAAGGTTGCATATGTGCGGTTATCCGCGGCAGGTTACGGCT 532 || | |||| || |||||||| | ||| | | | |||||| || || | || | Sbjct 465269 TCTCGATGAGCCAACTCGACAAGGTATCGTATATCGGATCATCCGCAGCCGGATTTGGAT 465328 Query 533 ACACTGGTCTGAAGCGAGACAACTATCTACTCGCTCGTGCGCATGCGACTTCCAACCTTG 592 || || |||||||| || |||||||| ||||||||||||||||||| |||||||||| Sbjct 465329 ACGTGGGCCTGAAGCGTGATAACTATCTGATCGCTCGTGCGCATGCGACCTCCAACCTTG 465388 Query 593 CCAACTTCGACCGTTGGGGCACTGAATTTAGGTTCACTCCATACAAGGCGTTCTCGCGTA 652 ||||||| | |||||||||||||||||| |||||||||||||||||||||| ||| ||| Sbjct 465389 CCAACTTTAATCGTTGGGGCACTGAATTTCGGTTCACTCCATACAAGGCGTTTTCGTGTA 465448 Query 653 CGCAACTTGCCCTCAGAGCGGATCCTAAAATCCGTCACGTGTGGGGAGCCCCTTTCCACA 712 ||||| | ||| | || || || || ||| | || |||||||||||||| |||||||||| Sbjct 465449 CGCAATTAGCCTTAAGGGCCGACCCGAAAGTTCGGCACGTGTGGGGAGCTCCTTTCCACA 465508 Query 713 CTATCCTTATCGAAGGTACAATCGCCCAACCAATAATTCAGAACCTGCAACTGAATGATC 772 | ||| | ||||| ||||| |||||||||||||| |||||||||||||||||||| | | Sbjct 465509 CAATCTTAATCGAGGGTACCATCGCCCAACCAATTATTCAGAACCTGCAACTGAAAAACC 465568 Query 773 AACCGATTTTCGTCGGCCGTGATATGTTCAAAGAGCTTCCATCCGTTATTTATCGGTTAA 832 ||||||| ||| | || | || ||||| ||||| ||||| | || |||| | | Sbjct 465569 AACCGATATTCATTGGAAGAGACATGTTTAAAGAACTTCCCGCGACCATCCATCGTATGA 465628 Query 833 TGCGTGAAGATCACTTTGCGTATTGTCTTGACTAGAGCTCGTTTGACTCATCCATTAATA 892 |||| || || ||| ||| |||||| | || | | || |||||||| || | || Sbjct 465629 TGCGCGACGACAACTATGCATATTGTGTAGATTTGTCTTCTTTTGACTCTTCTGTAAACG 465688 Query 893 CTTGGTTCATTGAACGTTTCTTTGAATTCGTGAGATGTACCGTTCGCTTT-CGAAACTCG 951 ||||| |||||| ||||||| || || || | | ||||||||| ||| |||| || Sbjct 465689 TATGGTTTATTGAATGTTTCTTCGACTTTGTAAAGTCTACCGTTCGTTTTCCGAATATC- 465747 Query 952 TTCTCTTCTAAGGCTGTTGCTTATTGTCAAGAAGAGCTATGTAACACTCCAGTTGTAATG 1011 |||||||| || ||| ||||||| |||||| || || || |||||||| ||| Sbjct 465748 TTCTCTTCATCAGCAGTTAGCTATTGTCGTGAAGAGTTAATCAATACGCCAGTTGTTATG 465807 Query 1012 CCAGATGGCAAACTGTATATCTGTAAAACAGGTATTTCTAGTGGTTCGTACTTTACGCAG 1071 |||||||||||||| || ||||||| ||||||| | | || |||||||| || || ||| Sbjct 465808 CCAGATGGCAAACTTTACATCTGTAGAACAGGTGTACCAAGCGGTTCGTATTTCACACAG 465867 Query 1072 CTGATCAACTCTTACGTTAACTTGATTCTATTGCGCGCGGCGCAGATGTGTGTATGTAGT 1131 ||||| | || || || ||||||||||| | || || || || | | ||| Sbjct 465868 ATGATCGATTCGTATGTGAACTTGATTCTTCTTCGTGCTGCACAACTTTACCATTGT--- 465924 Query 1132 AGAACG----CTTCCTACGTACGTGCTTGGCGATGATTCATTGTTCGTGAGCAGTGATCC 1187 ||||| || || || |||||| | || || ||||| |||||||| | | ||||| Sbjct 465925 -GAACGTGTACTACCAACCTACGTGTTGGGAGACGATTCGTTGTTCGTTTACCGCGATCC 465983 Query 1188 AGCACT-CTTAGAAAACTACGAGAGCTACTTCGCTTTGTTTGGTTTCAAGCTGAACACGA 1246 || ||| |||| ||||| || ||||| || |||| | |||||| | Sbjct 465984 TAATCTGCTTGATGAACT-CGAGAACTTTTTCGCGAAATTCAATTTCGTGATGAACAGAA 466042 Query 1247 AGAAGAGTGTCGTGTCCCAGGATCCGGAGAAGATCGTCTTCTTAGGACACAACTTCTACG 1306 ||||| |||||||| | ||||||| |||| |||| | || |||||||| |||| Sbjct 466043 AGAAGTCCATCGTGTCCAAAGATCCGGGAGAGATTATCTTTCTTGGTCACAACTTTTACG 466102 Query 1307 GCTCCCGTCTGACGCGAGACGACTTCACGTTAGCGTGTCTCGCTGTCCACACAGAAGAAC 1366 | || || || || || |||||||||||| | |||||||| || |||||||| ||||| | Sbjct 466103 GTTCTCGACTAACCCGTGACGACTTCACGCTTGCGTGTCTAGCCGTCCACACTGAAGACC 466162 Query 1367 CTGTGCTCACAGCTCACGAGTCGGTAACTCGACTCTGTTCACTACTGTACGATAGTGGCT 1426 | || ||| | | || || || | ||| || || || | |||| || ||||| | Sbjct 466163 CAGTTACAACACCCGATGAATCAGTGATTCGTCTTTGCTCGTTGTTGTATGACAGTGGAT 466222 Query 1427 ATAATTCTTTCTTTATGTTAAATGTTTTAAAGAAAAC-TGTGCTGTTGTACGGTTCTCCT 1485 ||||||| |||||| | || ||| | | |||||| | | | | ||||||||| |||| Sbjct 466223 ATAATTCGTTCTTTCTTTTGAATTTAATTAAGAAAGCGTCTAC-ATTGTACGGTCTTCCT 466281 Query 1486 CGTAC-TATGTATCGACCATATGTATCGTTATTCTTATTGGGTTGAAATGAAT 1537 | || | || ||| || ||||| || ||||| |||||||||||| ||| Sbjct 466282 -GAACGTTTGCATCACCCCTATGTGCAATTGTTCTTGTTGGGTTGAAATAAAT 466333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4882014087412