Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_033267.1 Length=13776 Score E Sequences producing significant alignments: (Bits) Value seq1274 520 8e-144 seq1140 273 2e-69 seq1216 113 4e-21 >seq1274 Length=73635 Score = 520 bits (576), Expect = 8e-144 Identities = 845/1206 (70%), Gaps = 14/1206 (1%) Strand=Plus/Minus Query 4897 GCTGTTGCCAGGTGATCCTTTCGGCCCTGTGAGAGCACGGGACTATGCGTTGTGGGACTG 4956 ||| ||||| || ||||| || || |||||| | | || ||||||||| | |||||||| Sbjct 58248 GCTCTTGCCCGGAGATCCGTTTGGGCCTGTGCGTTCGCGCGACTATGCGATTTGGGACTG 58189 Query 4957 TCGATCTTCAGGACCTGGTTTGTCCTCGCCAATCCCAAAGCGGCCTAATTGCACCGCTAT 5016 ||||||||| || || || | || || || || || || || || ||||| | || | Sbjct 58188 TCGATCTTCCGGTCCAGGGCTATCGTCTCCGATACCCAAACGACCAAATTGTTCGGCGGT 58129 Query 5017 CTCGCACCGAGACAAGACTCGTGTGGAAGGCCAGGTGACCATATGGAAAATTGACACCTC 5076 || ||||| ||||| || | || ||||| || | || ||||||||||| || || Sbjct 58128 GTCTCACCGTGACAAAACCAGGGTAGAAGGAGAGATAACTATATGGAAAATCGATACAAG 58069 Query 5077 ACTTTGGAAGGTCGAAGCATGCGAGTGTTTTTCGGAAACAGTTACAGCAACATGTGTCTC 5136 ||||||||| || || || ||||| || | ||||| || || || ||||| || || Sbjct 58068 TGCTTGGAAGGTTGATGCCTGTGAGTGCTTCACTGAAACCGTGACTGCGACATGCGTTTC 58009 Query 5137 TCCATTGTTCGGCCTGGAGTCAAAATCAACCAAACGCGAGTTTTCTCCTGCCAACTACAC 5196 ||| ||||||| || || || || ||||| || || ||||| | || || || ||| Sbjct 58008 TCCTCTGTTCGGACTTGAATCCAAGTCAACTAAGCGGGAGTTCACACCAGCTAATATCAC 57949 Query 5197 CTACTGTTTACAATCATGCCTCGATATCGATTCTGGTAGCTTGACACAGTCGGAGATCCA 5256 || || |||| | || | ||||| || || || || | | ||||| | || Sbjct 57948 GTATTGCCAACAAGCTTGTATGGATATTGACTCCGGAAGTCTAAAGCAGTCCATTGTTCA 57889 Query 5257 TGGTGTCATCGTGTCAGGGAAAGATCCGGAGTATGACTGCCCTATGTGGGGGACACGGTC 5316 || || |||||||||||||||||||| || |||||||| ||| | ||||| ||| || Sbjct 57888 CGGCGTGATCGTGTCAGGGAAAGATCCCGAATATGACTGTCCTCTCTGGGGAACAAAATC 57829 Query 5317 TGTCATTGTTACAATAACATCTGTTATGAGACTCACATTAATCGTTGATCATGATAGTGA 5376 || | |||| || |||||||| ||||| | || | || || ||||| || ||||| Sbjct 57828 AGTGAGCGTTATTATCACATCTGTGATGAGGATGACCCTGATTGTGGATCACGACAGTGA 57769 Query 5377 TGTGATGACTGGCGCAGTAAACTTTGCACGACCTTGTAAGTACAATGAAACTAAATGCCC 5436 || |||| || |||| || || || ||||| || | || ||||| | | || || Sbjct 57768 CGTTATGATGGGTTCAGTGAATTTCGCGCGACCGTGCACTTATAATGAGAGTGTGTGTCC 57709 Query 5437 GACGGTGAAGGGTGGATTTGTCTTCTGGAAGCAATTGATGAAACCATCCGATCGCTGTAA 5496 || || || || || ||||| |||||||| || | ||||||| ||| || || || || Sbjct 57708 CACTGTAAAAGGAGGGTTTGTGTTCTGGAAACAGCTTATGAAACAATCGGACCGATGCAA 57649 Query 5497 CCTCAAAGCGACCGGACTCTCTGAGATATG-CTCATTACATGGGGATACCGAACTATCAA 5555 ||| |||| |||||| | || || ||||| ||| | ||||| ||| ||| |||| | Sbjct 57648 CCTTAAAGTTACCGGAATATCGGAAATATGTGTCA-TGCATGGAGATGATGAATTATCGA 57590 Query 5556 TTCATTGCCCTCTCACTAAAGCAATATACCACCTCGGTCACCATCAAATTATACCTACGG 5615 |||| ||||| || || |||||||| |||||| | || ||| | | || || || Sbjct 57589 TTCACTGCCCGCTAACAAAAGCAATCTACCACTTGGGCCACAACAGTGTCATCCCAACCA 57530 Query 5616 TTGCATGCTCGTGGGTCGGGAATGAATCTAAGATCGATGTTTACAAAACATTAGAAGGTG 5675 | || ||||| | ||||| || | ||||| | || || | ||||||| | ||||||| Sbjct 57529 TAGCGTGCTCACGAGTCGGAAACTCAACTAAGGTGGACGTATTCAAAACACTTGAAGGTG 57470 Query 5676 TTTGGATTTCTGGAC-GTTCAAAGGCAGGTGGAAACCTTGTGGACTGGATAAAGACCCAT 5734 | ||||| || || | | |||| | ||| ||||| || || || ||||| | ||| Sbjct 57469 TGTGGATATCCGGCCAGCCCAAACG-AGGAGGAAATCTAGTAGATTGGATTGAATTGCAT 57411 Query 5735 CAACAGGGC-GACCAG---AGCGTTGTTTTCACCCAAAGCTCACCTAAAACCAACGGGTC 5790 | |||| | || | | || | ||||| ||| | || || | ||||| | Sbjct 57410 C----GGGCTGGCCTGGCTGGAGTCATCTTCACTCAAGTGACTCCCAAGAAAAACGGAAC 57355 Query 5791 ACACATTTTAGGCCTGACTGGACCCCAACTGGCCTGGTTAGAAGATTCGTGGGTCAAGAA 5850 ||||| |||||| | || ||||| || || | |||||||| || || ||||||||||| Sbjct 57354 TCACATCTTAGGCTTAACCGGACCACAGCTATCATGGTTAGAGGAGTCTTGGGTCAAGAA 57295 Query 5851 ATCGTCTGAGGAAAGATCGTATTTGGAGCTTCAGTTATGTCGGGAAGCTCAACACAGCTG 5910 || ||||| ||| |||| ||| | |||||||| ||||| ||||||| ||||| ||||| Sbjct 57294 GTCCTCTGAAGAACGATCCTATCTTGAGCTTCAATTATGCAGGGAAGCACAACATAGCTG 57235 Query 5911 GGACCTCGCTTGGAACCTACGGCACATCGCACCTATGGCAGCCGCGTCAATTTGGA-CAA 5969 ||| || || |||||| | || | || ||| || | || | | |||| ||| Sbjct 57234 GGATCTTGCATGGAACTTGAGGTCGCTAGCTCCTCAAGCGTCTGCAGCGCTATGGAGCAA 57175 Query 5970 AGACACCCCACACTATTTCTACTTTGTTTTCCGGCTTTGTACTTTCGTGGCCGTGTAAAG 6029 | || || || | || || ||| | || || || ||| | || || ||||| || || | Sbjct 57174 AAAC-CCTCATGCAATCTCGACTCTTTTCTCTGGATTTATTCTATCATGGCCTTGCAAGG 57116 Query 6030 AAGTATATCAATATCGGTTTCTTAAAAATGAGAATTGCTCCGAGAATTGGCCGATTGAGT 6089 || |||| ||||| | || || ||||| || || || || || |||||||| ||||| | Sbjct 57115 AAATATACCAATACAGATTCCTCAAAAACGATAACTGTTCAGAAAATTGGCCAATTGAAT 57056 Query 6090 ACTCAG 6095 |||||| Sbjct 57055 ACTCAG 57050 >seq1140 Length=418360 Score = 273 bits (302), Expect = 2e-69 Identities = 457/658 (69%), Gaps = 2/658 (0%) Strand=Plus/Minus Query 666 GTTGTATATCGAACCAGCTTCAACCTAAAAGATCCAAATAAATTGCTGGCGTTAAAAGCA 725 || || ||||| || ||||||||||| ||||| | || || |||| || || | Sbjct 21227 GTGGTCTATCGGACAAGCTTCAACCTCAAAGACGCGTCCAAGCTGTTGGCATTGAAGTCG 21168 Query 726 CAGATCGGGTCATTTTATGGAATCGCTCAGTCGGAAACTATTACGATCG-ATTTTCCGAT 784 || ||||| || ||||| || || | || || || || | | | || ||| || || Sbjct 21167 CAAATCGGATCGTTTTACGGGATAGTGCAATCCGAGGCTGTC-CAACCGGATTACCCTAT 21109 Query 785 TGAGTTTCAATCCGAGATGTCACAGCGATCGTATATTGGAACGCAAATTATAAACACAGC 844 || |||||| | ||||| || || ||||| ||||| | ||||| |||||| |||| Sbjct 21108 CGAATTTCAAACTCTAATGTCCCAACGGTCGTACATTGGCATCCAAATAATAAACGCAGC 21049 Query 845 TCTCGTATCGTGTTTGAAGGCCGCTTCAAAGCCAGATACTTCTGAATACTCGAAAGCCAT 904 |||||| || ||||| || || | | | ||||| | ||||| || ||||| | Sbjct 21048 TCTCGTTTCCGCATTGAAAGCAGCCGCTGATTCTTATACTACAGAATATTCTAAAGCAGT 20989 Query 905 ACTGAACTACTGTTTCCTCTTACATTCCAAGTGGAACGGATTTGCGGCGATTAGCCGACT 964 || |||| ||| ||| | | ||||| || |||||||| ||||| || || |||||||| Sbjct 20988 CCTAAACTTCTGCTTCGTACTGCATTCGAAATGGAACGGCTTTGCCGCAATAAGCCGACT 20929 Query 965 GATGGTGATATGCAAGAGTGAAAACCGTCAACCGCAGTTTTTCATCGACAGCGCTCGATT 1024 | || || |||| | ||| || | ||||| |||||||||||||| | ||||||| Sbjct 20928 TCTAGTCATCAGCAAAAATGAGGACAGACAACCCCAGTTTTTCATCGATACGGCTCGATA 20869 Query 1025 TGCTGTGACAGACTCTATGTTAGACTCACTTGAAAATTTCTTTGATCGACATCTCAGAAA 1084 ||| | ||| ||||| | ||| || ||| ||||| || |||| |||||| | |||| Sbjct 20868 TGCGGCGACTGACTCGAAGTTGGATCAACTGGAAAAGTTTTTTGGTCGACACATGAGAAT 20809 Query 1085 AGACCATTGCTCTCACTACGCCCCGTGGTGCCGAGCCATCGCTAATAATTACGAGATGGA 1144 || | ||| | || || || ||| ||||||| | || || ||||||| ||||| Sbjct 20808 TGAAAACCCATCTAAATATGCTCCATGGAGCCGAGCGCTTGCGAACCATTACGAAATGGA 20749 Query 1145 ATTGTCGAACTCCAATATGCTGATCGTGATCGCCATCTGGACCTATATAATCGATCCGTG 1204 | | || || |||||| | | || || ||||| ||||| || || |||||||| | Sbjct 20748 GCTCGCAAATTCAAATATGTTAGTTGTAATTGCCATATGGACATACATCATCGATCCAGG 20689 Query 1205 TAAAGAAACTCCGATATGGACCTCCCATATCCTCGACAAGTTACCTGCGACACATGATAA 1264 ||||| || ||||| || | || || || || || || || || ||||| | ||| Sbjct 20688 GAAAGAGACCCCGATTCGGTCATCACAAATTCTAGATAAATTGCCAGCGACTCTAGATGC 20629 Query 1265 AACTGCACTGAAAATCGCTCACATGATCCTCGCCTTCATACGTCATCTGCAACTCGGA 1322 | || ||||| || ||||| ||||| | ||||| | ||| ||||||||||| Sbjct 20628 AGTAGCTTGTAAAATAGCGCACATCATCCTATCGTTCATTCATCACTTGCAACTCGGA 20571 >seq1216 Length=116652 Score = 113 bits (124), Expect = 4e-21 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 660 TTAAGAGTTGTATATCGAACCAGCTTCAACCTAAAAGATCCAAATAAATTGCTGGCGTTA 719 ||| | |||||||| |||| || || || ||||||||| || ||| |||| || | Sbjct 77041 TTACGTGTTGTATACAGAACAAGTTTTAATCTAAAAGATGCATCTAAGCTGCTTGCCCTG 77100 Query 720 AAAGCACAGATCGGGTCATTTTATGGAATCGCTCAGTCGGAAACTATTACGATCGATTTT 779 ||| | ||||| || || || ||||| ||||||| || |||||||| || ||| | Sbjct 77101 AAATCGCAGATAGGATCTTTCTATGGGATCGCTCGATCTGAAACTATACCGCCCGACTAC 77160 Query 780 CCGATTGAGTTTCAATCCGAGATGTCACAGCGATCGTATATTGGAACGCAAATTATAAAC 839 |||||||||||||| || ||||| |||||||| | ||| || | ||||| || ||| Sbjct 77161 CCGATTGAGTTTCAGACCCTTATGTCTCAGCGATCTTGTATAGGGTCACAAATCATCAAC 77220 Query 840 ACAGC 844 || || Sbjct 77221 ACTGC 77225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 43953180804049