Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1087 149 3e-33 seq435 131 7e-28 seq389 125 3e-26 >seq1087 Length=1291 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||||||||||||||||| |||| |||| Sbjct 579 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 520 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 519 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 460 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 459 TGGGTATAGGGGCGA 445 >seq435 Length=9341 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 366 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 307 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| ||| || | Sbjct 306 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTCTGAAG 247 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || || ||||| || |||||||||| || Sbjct 246 AGAGAGTTCAACAGTACCTGAAACTGCTGAAAGGGAATCG 207 >seq389 Length=15266 Score = 125 bits (138), Expect = 3e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 6086 TGGTACCCGAAAGATGGTGAACTATGCTTGAGCAGAATGAAGCCAGAGGAAACTCTGGTG 6145 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| |||||| || |||||||||| ||||| | ||| || ||||||||| Sbjct 6146 GAAGTTCGTAGCGGTGTTGACGTGCAAATCACTCGTCTGACTTGAGTGTAGGGGCGA 6202 Score = 120 bits (132), Expect = 1e-24 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| ||| || |||||| | || ||| ||||||| || | || ||||| Sbjct 5105 CGAGTCGGGTTGCTTGAGACTGCAGCCCAAAGCGGGTGGTAAATCTCACCCAAGACTAAA 5164 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||| | ||||||||||||| ||||||| | || ||||| ||||||| ||| || | Sbjct 5165 TATTCGTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTCTGAA 5224 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||||| ||| || || Sbjct 5225 GAGAGAGTTCAACAGGACGTGAAACCGTTGACAGGCAAACG 5265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079828593050