Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq435 82.4 9e-14 seq389 82.4 9e-14 seq154 82.4 9e-14 >seq435 Length=9341 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 3866 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 3924 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 3925 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 3965 >seq389 Length=15266 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 2233 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 2175 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 2174 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 2134 >seq154 Length=111499 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 97644 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 97702 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 97703 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 97743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595153923894