Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq435 197 3e-48 seq389 174 3e-41 seq154 174 3e-41 seq492 159 7e-37 seq529 89.7 1e-15 >seq435 Length=9341 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 3324 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 3267 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 3266 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 3207 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 3206 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 3147 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 3146 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 3087 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 3086 AAGTCCCTGCCCTTTGTA 3069 >seq389 Length=15266 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 2812 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 2871 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 2872 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 2930 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 2931 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 2990 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 2991 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 3027 >seq154 Length=111499 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 97065 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 97006 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 97005 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 96947 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 96946 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 96887 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 96886 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 96850 >seq492 Length=7030 Score = 159 bits (176), Expect = 7e-37 Identities = 162/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||| ||||| | |||| |||||||||||||| ||| || | ||||| Sbjct 2178 AGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAGCGTCAACG 2237 Query 182 --AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGG 239 |||| | |||| | | || | | || |||| | |||| | || || || Sbjct 2238 TGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCTTGAATGGA 2296 Query 240 ATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||| | ||||||||| || | ||| |||||||||| || |||||||| | ||||| ||| Sbjct 2297 ATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGC 2356 Query 300 ACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||||||||| Sbjct 2357 TCGCGTTGATTACGTCCCTGCCCTTTGTA 2385 >seq529 Length=6009 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 ||| |||||||||| || |||||||| | ||||| ||| ||||||||||||||||||||| Sbjct 5712 CTTGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTCGCGTTGATTACGTCCCTGCC 5653 Query 322 CTTTGTA 328 ||||||| Sbjct 5652 CTTTGTA 5646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947124309248