Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6146 432 1e-118 seq897 399 7e-109 seq477 286 1e-74 seq340 286 1e-74 seq357 271 2e-70 seq965 259 2e-66 seq853 259 2e-66 seq529 167 8e-39 seq517 167 8e-39 seq905 145 2e-32 seq389 131 5e-28 seq353 93.3 1e-16 seq759 84.2 7e-14 >seq6146 Length=273 Score = 432 bits (478), Expect = 1e-118 Identities = 256/267 (96%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 TTCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCA 60 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 61 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTT 120 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATCCATTCATACGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 180 Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 TAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGACATTCAGAGCA 240 Query 507 CTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||| || Sbjct 241 CTGGGCAGAAATCACATTGCGTCATCA 267 >seq897 Length=1851 Score = 399 bits (442), Expect = 7e-109 Identities = 409/544 (75%), Gaps = 70/544 (13%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 543 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 484 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 483 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTC 424 Query 127 G-----GCCCGC--------GAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAA 166 | |||||| || |||| ||| |||||||| | |||| | Sbjct 423 GCGCCCGCCCGCACGCGCGGGACGGACGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCT 364 Query 167 GACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 || |||| ||| | | ||| |||||||||| || ||||||||||||||| || Sbjct 363 CGCCCCC-CCGCCTCACCGGGTCAGTGAAAAAACGATGAGAGTAGTGGTATTTCACCGGC 305 Query 227 G--------------------------CCGAA------ACGG-----------------C 237 | |||| |||| | Sbjct 304 GGCCCGCGAGGCCGGCGTGCCCCGACCCCGACGCGAGGACGGGGCCGGGCGCCGGGGGCC 245 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||||||||||||||| ||| ||||| | | ||||||||||||||||||| Sbjct 244 TCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAAC 185 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 184 AGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGA 125 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 124 TAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 65 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 64 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGAT 5 Query 478 TGAA 481 |||| Sbjct 4 TGAA 1 >seq477 Length=7352 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 1431 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 1490 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1491 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 1550 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 1551 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 1610 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 1611 ACGAGGCATTTGGCTA 1626 Score = 145 bits (160), Expect = 2e-32 Identities = 82/83 (99%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 7270 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTG 7329 Query 495 ACATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||||||||||| Sbjct 7330 ACATTCAGAGCACTGGGCAGAAA 7352 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 1049 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 1108 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 1109 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 1152 >seq340 Length=26095 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 24818 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 24759 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 24758 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 24699 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 24698 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 24639 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 24638 ACGAGGCATTTGGCTA 24623 Score = 167 bits (184), Expect = 8e-39 Identities = 95/97 (98%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 19717 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGAC 19658 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||| || Sbjct 19657 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 19621 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 25200 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 25141 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 25140 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 25097 >seq357 Length=20832 Score = 271 bits (300), Expect = 2e-70 Identities = 180/200 (90%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 12184 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 12243 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 12244 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTACGCTAG 12303 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | ||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 12304 ACAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 12363 Query 417 ACGAGGCATTTGGCTACCTT 436 ||| ||| ||||||||| || Sbjct 12364 ACGGGGCCTTTGGCTACATT 12383 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| | | |||| ||||||||||||||| |||| || Sbjct 11802 TTTACTCTAAGCGAGGTTTCTGTCCCCGCTGAGCTTACCTTAGGACACCTGCATTATCGT 11861 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||| ||| | |||||||| |||||| ||| Sbjct 11862 TTAACAGATGTACCGCCTCAGTCCAACTCCCCGTCTGACACTGT 11905 >seq965 Length=813 Score = 259 bits (286), Expect = 2e-66 Identities = 157/166 (95%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 TTCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCA 60 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 61 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTT 120 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 121 GATCCATTCATACGCGTCACTAATTAGATGACGAGGCATTTGGCTA 166 >seq853 Length=2109 Score = 259 bits (286), Expect = 2e-66 Identities = 157/166 (95%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2109 TTCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCA 2050 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 2049 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTT 1990 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1989 GATCCATTCATACGCGTCACTAATTAGATGACGAGGCATTTGGCTA 1944 >seq529 Length=6009 Score = 167 bits (184), Expect = 8e-39 Identities = 95/97 (98%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4209 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGAC 4268 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||| || Sbjct 4269 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 4305 >seq517 Length=6008 Score = 167 bits (184), Expect = 8e-39 Identities = 95/97 (98%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3322 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGAC 3263 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||| || Sbjct 3262 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 3226 Score = 145 bits (160), Expect = 2e-32 Identities = 82/83 (99%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 83 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTG 24 Query 495 ACATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||||||||||| Sbjct 23 ACATTCAGAGCACTGGGCAGAAA 1 >seq905 Length=1791 Score = 145 bits (160), Expect = 2e-32 Identities = 82/83 (99%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 83 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTT 24 Query 493 TGACATTCAGAGCACTGGGCAGA 515 ||||||||||||||||||||||| Sbjct 23 TGACATTCAGAGCACTGGGCAGA 1 >seq389 Length=15266 Score = 131 bits (144), Expect = 5e-28 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 7728 CGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 7669 Query 517 ATCACATTGCGTCAACA 533 |||||||||||||| || Sbjct 7668 ATCACATTGCGTCATCA 7652 >seq353 Length=21324 Score = 93.3 bits (102), Expect = 1e-16 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA---TTTCTTCACTTT 493 ||||||||||||||||||| ||||||| |||||||||| || || |||||| ||||| Sbjct 17493 AAGAGAGTCATAGTTACTCGCGCCGTTCACCCGCGCTTAATTCAATTTTTTCTTAACTTT 17434 Query 494 GACATTCAGAGCACTGGGCAGAAATCA 520 |||||| | | |||||| || |||||| Sbjct 17433 GACATTGAAACCACTGGACAAAAATCA 17407 >seq759 Length=2873 Score = 84.2 bits (92), Expect = 7e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2822 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGACTGAATTTCTT 2872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635069331168