Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq897 104 4e-20
seq1919 102 1e-19
seq1904 102 1e-19
seq477 102 1e-19
seq340 102 1e-19
>seq897
Length=1851
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 868 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 925
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 926 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 979
>seq1919
Length=692
Score = 102 bits (112), Expect = 1e-19
Identities = 92/113 (81%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| || |||| | |||||| |||| | |||| | | ||
Sbjct 659 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 602
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 601 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 549
>seq1904
Length=700
Score = 102 bits (112), Expect = 1e-19
Identities = 92/113 (81%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| || |||| | |||||| |||| | |||| | | ||
Sbjct 667 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 610
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 609 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 557
>seq477
Length=7352
Score = 102 bits (112), Expect = 1e-19
Identities = 92/113 (81%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| || |||| | |||||| |||| | |||| | | ||
Sbjct 722 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 665
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 664 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 612
>seq340
Length=26095
Score = 102 bits (112), Expect = 1e-19
Identities = 92/113 (81%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| || |||| | |||||| |||| | |||| | | ||
Sbjct 25527 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 25584
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 25585 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 25637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819136583424
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |