Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq435 383 5e-104 seq389 370 3e-100 seq154 370 3e-100 >seq435 Length=9341 Score = 383 bits (424), Expect = 5e-104 Identities = 420/558 (75%), Gaps = 59/558 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 4198 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 4257 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4258 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 4317 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 4318 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 4377 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 4378 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 4437 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 || | |||||| | | ||||| || ||||||| Sbjct 4438 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 4497 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 4498 CCGGCCGGAGCCGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 4556 Query 326 CC-------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 || |||| ||||| | |||||||||||||||||||||||||| | Sbjct 4557 CCCCCCCGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAG 4615 Query 372 TTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||||||| |||| | || | | | |||| ||| |||||||||||||||||||||| Sbjct 4616 TTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATT 4675 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 4676 CGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAA 4735 Query 487 GCATATGACTACTGGCAG 504 ||||||| |||||||||| Sbjct 4736 GCATATG-CTACTGGCAG 4752 >seq389 Length=15266 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 1907 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 1848 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1847 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1788 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 1787 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 1728 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 1727 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 1668 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 1667 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 1608 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 1607 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 1548 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 1547 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 1493 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 1492 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 1433 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1432 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1385 >seq154 Length=111499 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 97970 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 98029 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98030 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 98089 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 98090 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 98149 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 98150 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 98209 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 98210 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 98269 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 98270 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 98329 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 98330 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 98384 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 98385 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 98444 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98445 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 98492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510279303936