Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq67 109 4e-19
seq22 89.7 4e-13
>seq67
Length=189510
Score = 109 bits (120), Expect = 4e-19
Identities = 138/186 (74%), Gaps = 4/186 (2%)
Strand=Plus/Minus
Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346
||||| | || || |||||||| |||||||| || || ||| | || ||| |||
Sbjct 39983 GGACATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 39924
Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405
|||||||||||||||||||| || || | ||| || ||||| | || || | ||| |||
Sbjct 39923 AGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG 39864
Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464
| |||| ||| ||| || || ||||| ||||| || ||||| ||||||| |||| |
Sbjct 39863 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCG 39806
Query 66465 CGAACG 66470
| ||||
Sbjct 39805 CAAACG 39800
Score = 107 bits (118), Expect = 2e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || |||||||| || || | | || | |||||| || | ||||||||| || ||
Sbjct 41518 TCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCAGTT 41459
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| || || ||| | ||||||||||| |||| ||||| |||||||||||||||
Sbjct 41458 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 41399
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| | || |||||||||||||| || || ||| | || | || || ||||||
Sbjct 41398 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 41339
Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314
|| |||| | | || || ||||| || |||||||||| ||||| ||||
Sbjct 41338 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 41282
Score = 96.9 bits (106), Expect = 3e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096
||| || || | || ||| | ||||||||||||||||| || || ||| || ||
Sbjct 40293 CTCATCGGGTGAGGAATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACC 40234
Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156
|| ||| || ||||| || | |||||| ||||| ||||| | ||| |||| |||||
Sbjct 40233 CAGATTTTGCTGATTCGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCC 40174
Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189
||| |||| ||| |||||||| || |||| |||
Sbjct 40173 GGTTTCAATTTGAGACTCAATAATTGCGTACCA 40141
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126
||||||| ||| || ||| || || ||||||| |||| || |||||| ||
Sbjct 38833 TTGTGCAAATTGCTGACGGCTATGCGTGCGGCCAATGTCGCATAGTCCGGATGTTTTGTA 38774
Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186
|||| |||||| | ||||||||||||| | || | ||| | || |||||||| ||
Sbjct 38773 GTCATTGTGGCGGAAATTTCAGCGGCCAAATTGTCCAATTCGACAGTTGTCACACCTTGA 38714
Query 67187 TACAGGCCAGCAACGACTTT 67206
|||||||| |||| ||||||
Sbjct 38713 TACAGGCCGGCAATGACTTT 38694
>seq22
Length=309055
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764
|| ||||| | || ||||| ||||||||||| ||||| ||||| || | || |||
Sbjct 282047 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCGGTACGTTTGATTGGC 281988
Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823
||||| |||| || ||||| ||||| ||||||| |||||||| ||||| |||| ||
Sbjct 281987 ATGAACTGTGTTCTGATGTCTCAGTACATTGAATACGTTGCCGATCGTCTACTGGTTGA 281929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397529280728240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |