Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq560 154 2e-35 seq419 154 2e-35 seq74 154 2e-35 >seq560 Length=11096 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 2621 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 2564 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | ||||| |||| Sbjct 2563 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCATTCGATT 2504 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | |||| || |||| ||||| ||| ||||||||||||| Sbjct 2503 GCCAAACCTTTTCAGGTAAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 2445 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 2444 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 2405 >seq419 Length=26797 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 2621 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 2564 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | ||||| |||| Sbjct 2563 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCATTCGATT 2504 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | |||| || |||| ||||| ||| ||||||||||||| Sbjct 2503 GCCAAACCTTTTCAGGTAAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 2445 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 2444 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 2405 >seq74 Length=149687 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 139497 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 139554 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | ||||| |||| Sbjct 139555 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCATTCGATT 139614 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | |||| || |||| ||||| ||| ||||||||||||| Sbjct 139615 GCCAAACCTTTTCAGGTAAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 139673 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 139674 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 139713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751961812030