Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq560 86.0 3e-15 seq419 86.0 3e-15 seq74 86.0 3e-15 >seq560 Length=11096 Score = 86.0 bits (94), Expect = 3e-15 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 ||||| ||| |||||| |||| || ||| ||| |||||| |||||| || ||| | Sbjct 2089 GAACCGAAACACTTTGGTTTCCCGGAAGCTGCTCGCCGAGTCTTAAATGA--ACTTCGGC 2032 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || |||||||||||| |||| |||| | ||||||||||||| |||||| Sbjct 2031 GAATCGCTGGTTGGCATAGTTTACCGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 1974 >seq419 Length=26797 Score = 86.0 bits (94), Expect = 3e-15 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 ||||| ||| |||||| |||| || ||| ||| |||||| |||||| || ||| | Sbjct 2089 GAACCGAAACACTTTGGTTTCCCGGAAGCTGCTCGCCGAGTCTTAAATGA--ACTTCGGC 2032 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || |||||||||||| |||| |||| | ||||||||||||| |||||| Sbjct 2031 GAATCGCTGGTTGGCATAGTTTACCGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 1974 >seq74 Length=149687 Score = 86.0 bits (94), Expect = 3e-15 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 ||||| ||| |||||| |||| || ||| ||| |||||| |||||| || ||| | Sbjct 140029 GAACCGAAACACTTTGGTTTCCCGGAAGCTGCTCGCCGAGTCTTAAATGA--ACTTCGGC 140086 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || |||||||||||| |||| |||| | ||||||||||||| |||||| Sbjct 140087 GAATCGCTGGTTGGCATAGTTTACCGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 140144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278386318380