Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq560 125 3e-26 seq419 125 3e-26 >seq560 Length=11096 Score = 125 bits (138), Expect = 3e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 5682 TGGTACCCGAAAGATGGTGAACTATGCTTGAGCAGAATGAAGCCAGAGGAAACTCTGGTG 5741 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| |||||| || |||||||||| ||||| | ||| || ||||||||| Sbjct 5742 GAAGTTCGTAGCGGTGTTGACGTGCAAATCACTCGTCTGACTTGAGTGTAGGGGCGA 5798 Score = 120 bits (132), Expect = 1e-24 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| ||| || |||||| | || ||| ||||||| || | || ||||| Sbjct 4701 CGAGTCGGGTTGCTTGAGACTGCAGCCCAAAGCGGGTGGTAAATCTCACCCAAGACTAAA 4760 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||| | ||||||||||||| ||||||| | || ||||| ||||||| ||| || | Sbjct 4761 TATTCGTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTCTGAA 4820 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||||| ||| || || Sbjct 4821 GAGAGAGTTCAACAGGACGTGAAACCGTTGACAGGCAAACG 4861 >seq419 Length=26797 Score = 125 bits (138), Expect = 3e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 5682 TGGTACCCGAAAGATGGTGAACTATGCTTGAGCAGAATGAAGCCAGAGGAAACTCTGGTG 5741 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| |||||| || |||||||||| ||||| | ||| || ||||||||| Sbjct 5742 GAAGTTCGTAGCGGTGTTGACGTGCAAATCACTCGTCTGACTTGAGTGTAGGGGCGA 5798 Score = 120 bits (132), Expect = 1e-24 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| ||| || |||||| | || ||| ||||||| || | || ||||| Sbjct 4701 CGAGTCGGGTTGCTTGAGACTGCAGCCCAAAGCGGGTGGTAAATCTCACCCAAGACTAAA 4760 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||| | ||||||||||||| ||||||| | || ||||| ||||||| ||| || | Sbjct 4761 TATTCGTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTCTGAA 4820 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||||| ||| || || Sbjct 4821 GAGAGAGTTCAACAGGACGTGAAACCGTTGACAGGCAAACG 4861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079887559100