Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq560 210 3e-52 seq419 210 3e-52 seq74 210 3e-52 >seq560 Length=11096 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 2461 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 2402 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 2401 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 2347 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 2346 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 2287 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 2286 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 2227 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 2226 TCAATCTGTC 2217 >seq419 Length=26797 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 2461 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 2402 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 2401 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 2347 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 2346 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 2287 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 2286 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 2227 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 2226 TCAATCTGTC 2217 >seq74 Length=149687 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 139657 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 139716 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 139717 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 139771 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 139772 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 139831 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 139832 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 139891 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 139892 TCAATCTGTC 139901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796759537002