Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq386 378 1e-102 seq896 170 3e-40 seq798 170 3e-40 seq740 170 3e-40 >seq386 Length=35738 Score = 378 bits (418), Expect = 1e-102 Identities = 261/294 (89%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 26016 TACTGAGCAGGATTACTATCGCAACGACTTGTCATCAGTAGGGTAAAACTAACCTGTCTC 26075 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 26076 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 26135 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26136 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 26195 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 26196 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCA 26255 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | |||||||||||||||||| ||||| ||||| ||||| Sbjct 26256 TGAAATCTACACAATCAAAAGGATCGATAGGCCACGCTTTCGCGGTTTCTATTC 26309 Score = 190 bits (210), Expect = 3e-46 Identities = 131/148 (89%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 19190 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGT 19249 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 |||||||||||||||||||||| ||||||| || | |||| | | | ||||||||| Sbjct 19250 TATCCCTGTGGTAACTTTTCTGACACCTCTTGCATGAAATCTACACAATCAAAAGGATCG 19309 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||| ||||| ||||| ||||| Sbjct 19310 ATAGGCCACGCTTTCGCGGTTTCTATTC 19337 >seq896 Length=2504 Score = 170 bits (188), Expect = 3e-40 Identities = 128/148 (86%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 1967 TACTGAGCAGGATTACTATCGCAACGACTTGTCATCAGTAGGGTAAAACTAACCTGTCTC 2026 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 2027 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 2086 Query 120 AATTCTGCT-TCGGTATGATAGGAAGAG 146 ||||||| | | ||||||||||||| Sbjct 2087 AATTCTGATAGAGCAATGATAGGAAGAG 2114 >seq798 Length=3909 Score = 170 bits (188), Expect = 3e-40 Identities = 128/148 (86%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 3372 TACTGAGCAGGATTACTATCGCAACGACTTGTCATCAGTAGGGTAAAACTAACCTGTCTC 3431 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 3432 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 3491 Query 120 AATTCTGCT-TCGGTATGATAGGAAGAG 146 ||||||| | | ||||||||||||| Sbjct 3492 AATTCTGATAGAGCAATGATAGGAAGAG 3519 >seq740 Length=4858 Score = 170 bits (188), Expect = 3e-40 Identities = 128/148 (86%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 3371 TACTGAGCAGGATTACTATCGCAACGACTTGTCATCAGTAGGGTAAAACTAACCTGTCTC 3430 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 3431 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 3490 Query 120 AATTCTGCT-TCGGTATGATAGGAAGAG 146 ||||||| | | ||||||||||||| Sbjct 3491 AATTCTGATAGAGCAATGATAGGAAGAG 3518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854355212352