Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq560 107 2e-21 seq419 107 2e-21 seq74 107 2e-21 >seq560 Length=11096 Score = 107 bits (118), Expect = 2e-21 Identities = 132/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACATTACCAT 69 |||||||||||||||||||||| | |||||||||| | ||| ||||| ||| Sbjct 1727 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 1786 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||||||||| || | |||||||||||||| ||||| | | |||| |||||| Sbjct 1787 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 1844 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | | | | || |||||| | ||||| || | ||||||||||||||||| Sbjct 1845 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGAT 1901 >seq419 Length=26797 Score = 107 bits (118), Expect = 2e-21 Identities = 132/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACATTACCAT 69 |||||||||||||||||||||| | |||||||||| | ||| ||||| ||| Sbjct 1727 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 1786 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||||||||| || | |||||||||||||| ||||| | | |||| |||||| Sbjct 1787 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 1844 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | | | | || |||||| | ||||| || | ||||||||||||||||| Sbjct 1845 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGAT 1901 >seq74 Length=149687 Score = 107 bits (118), Expect = 2e-21 Identities = 132/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACATTACCAT 69 |||||||||||||||||||||| | |||||||||| | ||| ||||| ||| Sbjct 140391 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 140332 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||||||||| || | |||||||||||||| ||||| | | |||| |||||| Sbjct 140331 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 140274 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | | | | || |||||| | ||||| || | ||||||||||||||||| Sbjct 140273 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGAT 140217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511973999680