Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq560 370 3e-100 seq419 370 3e-100 seq74 370 3e-100 seq3884 333 8e-89 >seq560 Length=11096 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 1500 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 1441 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1381 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 1380 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 1321 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 1320 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 1261 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 1260 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 1201 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 1200 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 1141 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 1140 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 1086 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 1085 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 1026 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 978 >seq419 Length=26797 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 1500 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 1441 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1381 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 1380 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 1321 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 1320 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 1261 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 1260 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 1201 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 1200 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 1141 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 1140 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 1086 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 1085 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 1026 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 978 >seq74 Length=149687 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 140618 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 140677 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140678 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 140737 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 140738 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 140797 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 140798 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 140857 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 140858 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 140917 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 140918 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 140977 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 140978 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 141032 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 141033 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 141092 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141093 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 141140 >seq3884 Length=292 Score = 333 bits (368), Expect = 8e-89 Identities = 202/214 (94%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 214 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 155 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 95 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 94 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 35 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCA 214 |||||||||||||||||||||||||||||||||| Sbjct 34 GGCCACTATCCTACCATCGAAAGTTGATAGGGCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510320824832