Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq241 109 4e-19 seq68 89.7 4e-13 >seq241 Length=74255 Score = 109 bits (120), Expect = 4e-19 Identities = 138/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||||| | || || |||||||| |||||||| || || ||| | || ||| ||| Sbjct 57647 GGACATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 57706 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405 |||||||||||||||||||| || || | ||| || ||||| | || || | ||| ||| Sbjct 57707 AGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG 57766 Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | |||| ||| ||| || || ||||| ||||| || ||||| ||||||| |||| | Sbjct 57767 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCG 57824 Query 66465 CGAACG 66470 | |||| Sbjct 57825 CAAACG 57830 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| || || | | || | |||||| || | ||||||||| || || Sbjct 56112 TCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCAGTT 56171 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| | ||||||||||| |||| ||||| ||||||||||||||| Sbjct 56172 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 56231 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | || |||||||||||||| || || ||| | || | || || |||||| Sbjct 56232 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 56291 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 || |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 56292 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 56348 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126 ||||||| ||| || ||| || || ||||||| |||| || |||||| || Sbjct 58797 TTGTGCAAATTGCTGACGGCTATGCGTGCGGCCAATGTCGCATAGTCCGGATGTTTTGTA 58856 Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186 |||| |||||| | ||||||||||||| | || | ||| | || |||||||| || Sbjct 58857 GTCATTGTGGCGGAAATTTCAGCGGCCAAATTGTCCAATTCGACAGTTGTCACACCTTGA 58916 Query 67187 TACAGGCCAGCAACGACTTT 67206 |||||||| |||| |||||| Sbjct 58917 TACAGGCCGGCAATGACTTT 58936 >seq68 Length=159368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || ||||| | || ||||| ||||||||||| ||||| ||||| || | || ||| Sbjct 129933 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCGGTACGTTTGATTGGC 129992 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 ||||| |||| || ||||| ||||| ||||||| |||||||| ||||| |||| || Sbjct 129993 ATGAACTGTGTTCTGATGTCTCAGTACATTGAATACGTTGCCGATCGTCTACTGGTTGA 130051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397542600622880