Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3025 185 2e-44 seq1746 185 2e-44 seq1454 185 2e-44 seq3197 174 3e-41 >seq3025 Length=21048 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 8136 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 8195 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 8196 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 8253 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 8254 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 8313 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 8314 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 8372 Query 310 AGTTAGGGG 318 |||||| || Sbjct 8373 AGTTAGAGG 8381 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 12785 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 12844 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 12845 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 12902 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 12903 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 12962 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 12963 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 13021 Query 310 AGTTAGGGG 318 |||||| || Sbjct 13022 AGTTAGAGG 13030 >seq1746 Length=65455 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 62608 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 62667 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 62668 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 62725 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 62726 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 62785 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 62786 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 62844 Query 310 AGTTAGGGG 318 |||||| || Sbjct 62845 AGTTAGAGG 62853 >seq1454 Length=76590 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 64266 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 64325 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 64326 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 64383 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 64384 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 64443 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 64444 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 64502 Query 310 AGTTAGGGG 318 |||||| || Sbjct 64503 AGTTAGAGG 64511 >seq3197 Length=17349 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 8092 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 8151 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 8152 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 8210 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 8211 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 8270 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 8271 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 8330 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 8331 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 8367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915159337664