Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3197 244 2e-62 seq3025 210 3e-52 seq1746 210 3e-52 seq1454 210 3e-52 >seq3197 Length=17349 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 8867 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 8809 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 8808 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 8750 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 8749 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 8690 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 8689 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 8630 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 8629 ATCAATCTGTC 8619 >seq3025 Length=21048 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 8870 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 8811 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 8810 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 8756 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 8755 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 8696 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 8695 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 8636 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 8635 TCAATCTGTC 8626 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 13519 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 13460 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 13459 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 13405 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 13404 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 13345 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 13344 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 13285 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 13284 TCAATCTGTC 13275 >seq1746 Length=65455 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 63342 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 63283 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 63282 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 63228 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 63227 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 63168 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 63167 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 63108 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 63107 TCAATCTGTC 63098 >seq1454 Length=76590 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 65000 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 64941 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 64940 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 64886 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 64885 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 64826 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 64825 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 64766 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 64765 TCAATCTGTC 64756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796765704483