Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq3197 91.5 9e-17 seq3025 86.0 4e-15 seq1746 86.0 4e-15 seq1454 86.0 4e-15 >seq3197 Length=17349 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 9065 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 9008 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 9007 TAAT-CAACGCAAGCT 8993 >seq3025 Length=21048 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 9070 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 9013 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 9012 TAAT-CAACGCGAGCT 8998 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 13719 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 13662 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 13661 TAAT-CAACGCGAGCT 13647 >seq1746 Length=65455 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 63542 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 63485 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 63484 TAAT-CAACGCGAGCT 63470 >seq1454 Length=76590 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 65200 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 65143 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 65142 TAAT-CAACGCGAGCT 65128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300787470740