Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq3197 82.4 9e-14 seq3025 82.4 9e-14 seq1746 82.4 9e-14 seq1454 82.4 9e-14 >seq3197 Length=17349 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 8227 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 8169 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 8168 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 8128 >seq3025 Length=21048 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 8235 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 8177 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 8176 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 8136 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 12884 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 12826 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 12825 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 12785 >seq1746 Length=65455 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 62707 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 62649 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 62648 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 62608 >seq1454 Length=76590 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 64365 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 64307 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 64306 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 64266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595174381662