Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3197 499 1e-138 seq3025 459 9e-127 seq3533 286 1e-74 seq3371 280 5e-73 seq3918 170 6e-40 seq4148 102 3e-19 seq3875 93.3 1e-16 >seq3197 Length=17349 Score = 499 bits (552), Expect = 1e-138 Identities = 462/596 (78%), Gaps = 70/596 (12%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 15386 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 15327 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 15326 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTC 15267 Query 127 G-----GCCCGC--------GAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAA 166 | |||||| || |||| ||| |||||||| | |||| | Sbjct 15266 GCGCCCGCCCGCACGCGCGGGACGGACGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCT 15207 Query 167 GACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 || |||| ||| | | ||| |||||||||| || ||||||||||||||| || Sbjct 15206 CGCCCCC-CCGCCTCACCGGGTCAGTGAAAAAACGATGAGAGTAGTGGTATTTCACCGGC 15148 Query 227 G--------------------------CCGAA------ACGG-----------------C 237 | |||| |||| | Sbjct 15147 GGCCCGCGAGGCCGGCGTGCCCCGACCCCGACGCGAGGACGGGGCCGGGCGCCGGGGGCC 15088 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||||||||||||||| ||| ||||| | | ||||||||||||||||||| Sbjct 15087 TCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAAC 15028 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 15027 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGA 14968 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 14967 TAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 14908 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 14907 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGAT 14848 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 14847 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 14792 >seq3025 Length=21048 Score = 459 bits (508), Expect = 9e-127 Identities = 280/297 (94%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 4470 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 4411 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4410 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 4351 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 4350 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 4291 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4290 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGA 4231 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4230 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 4174 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 18875 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 18816 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 18815 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 18756 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 18755 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 18696 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 18695 ACGAGGCATTTGGCTA 18680 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 4852 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 4793 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 4792 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 4749 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 19257 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 19198 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 19197 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 19154 >seq3533 Length=14482 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 8455 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 8396 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 8395 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 8336 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 8335 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 8276 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 8275 ACGAGGCATTTGGCTA 8260 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 8837 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 8778 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 8777 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 8734 >seq3371 Length=15014 Score = 280 bits (310), Expect = 5e-73 Identities = 182/200 (91%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 7654 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 7713 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 7714 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTACGCTAG 7773 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 7774 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 7833 Query 417 ACGAGGCATTTGGCTACCTT 436 ||| ||||||||||||| || Sbjct 7834 ACGGGGCATTTGGCTACATT 7853 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 7272 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 7331 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 7332 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 7375 >seq3918 Length=8590 Score = 170 bits (188), Expect = 6e-40 Identities = 97/99 (98%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 4998 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTG 5057 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||| || Sbjct 5058 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 5096 >seq4148 Length=178549 Score = 102 bits (112), Expect = 3e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 168965 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTCAC 168906 Query 497 A 497 | Sbjct 168905 A 168905 >seq3875 Length=10205 Score = 93.3 bits (102), Expect = 1e-16 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA---TTTCTTCACTTT 493 ||||||||||||||||||| ||||||| |||||||||| || || |||||| ||||| Sbjct 1632 AAGAGAGTCATAGTTACTCGCGCCGTTCACCCGCGCTTAATTCAATTTTTTCTTAACTTT 1691 Query 494 GACATTCAGAGCACTGGGCAGAAATCA 520 |||||| | | |||||| || |||||| Sbjct 1692 GACATTGAAACCACTGGACAAAAATCA 1718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635127348064