Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3197 104 4e-20 seq4206 102 1e-19 seq3025 102 1e-19 >seq3197 Length=17349 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 15711 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 15768 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 15769 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 15822 >seq4206 Length=1777 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| || |||| | |||||| |||| | |||| | | || Sbjct 111 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 168 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| ||||||| ||||||| ||||||||||||||||||||||| Sbjct 169 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 221 >seq3025 Length=21048 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| || |||| | |||||| |||| | |||| | | || Sbjct 5179 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 5236 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| ||||||| ||||||| ||||||||||||||||||||||| Sbjct 5237 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 5289 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| || |||| | |||||| |||| | |||| | | || Sbjct 19584 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 19641 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| ||||||| ||||||| ||||||||||||||||||||||| Sbjct 19642 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 19694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819164740352