Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1533 154 2e-35 seq666 75.2 2e-11 >seq1533 Length=12210 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 8129 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 8186 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | |||||| |||| Sbjct 8187 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCAATCGATT 8246 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | ||| || |||| ||||| ||| ||||||||||||| Sbjct 8247 GCCAAACCTTTTCAGGTTAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 8305 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 8306 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 8345 >seq666 Length=79188 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 ||||||||||| |||| |||||| |||| | ||||||| |||||||| |||| |||||| Sbjct 12019 CAAAGGGCAGGCGCGTAATCAACGTGAGC-TAATGACTCACGCTTACTGGGAA-TTCCTC 11962 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 || ||| | |||||||||| |||| || ||| || Sbjct 11961 GTGCAAGGGAAGCAATTGCAATTCCCTATTCCATTCAAGA 11922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751978370835