Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1533 203 5e-50 >seq1533 Length=12210 Score = 203 bits (224), Expect = 5e-50 Identities = 201/252 (80%), Gaps = 16/252 (6%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 8289 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 8348 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGC---CAGC-CACCAAC 127 | | || | | || |||| |||||||||||||| |||| || || Sbjct 8349 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAT 8403 Query 128 CATAGT-CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | | | | || ||||||| ||| || |||||||||||||||||||||||||||| Sbjct 8404 TACAATACTATCA--CTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGA 8461 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 8462 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGC 8521 Query 247 TATCAATCTGTC 258 | |||||||||| Sbjct 8522 TGTCAATCTGTC 8533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796777082289