Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2810 114 1e-20 seq2603 98.7 8e-16 >seq2810 Length=199988 Score = 114 bits (126), Expect = 1e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || || | | |||| |||||| || | ||||||||| || || Sbjct 181996 ATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGT 182055 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || || || ||| | ||||||||||| |||| ||||| |||||||||||||| Sbjct 182056 TTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTC 182115 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||| | || |||||||||||||| ||||| ||| | || | || || ||||| Sbjct 182116 GGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCCAT 182175 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 ||| |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 182176 GTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 182233 Score = 114 bits (126), Expect = 1e-20 Identities = 139/186 (75%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||||| | || || |||||||| |||||||| || || ||| | || ||| ||| Sbjct 183521 GGACATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 183580 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405 ||||||||||||||||||||||| || | ||| || ||||| | || || | ||| ||| Sbjct 183581 AGATCAGGTATCCAGAGGGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG 183640 Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | |||| ||| ||| || || ||||| ||||| || ||||| ||||||| |||| | Sbjct 183641 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCG 183698 Query 66465 CGAACG 66470 | |||| Sbjct 183699 CAAACG 183704 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126 ||||||| ||| || ||| || || ||||||| |||| || |||||| || Sbjct 184669 TTGTGCAAATTGCTGACGGCTATGCGTGCGGCCAATGTCGCATAGTCCGGATGTTTTGTA 184728 Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186 |||| |||||| | ||||||||||||| | || | ||| | || |||||||| || Sbjct 184729 GTCATTGTGGCGGAAATTTCAGCGGCCAAATTGTCCAATTCGACAGTTGTCACACCTTGA 184788 Query 67187 TACAGGCCAGCAACGACTTT 67206 |||||||| |||| |||||| Sbjct 184789 TACAGGCCGGCAATGACTTT 184808 >seq2603 Length=690759 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || ||||| | || ||||| ||||||||||| ||||| ||||| || | || ||| Sbjct 456827 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCAGTACGTTTGATTGGC 456768 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 ||||| |||| |||||||| ||||| ||||||| |||||||| ||||| ||||||| Sbjct 456767 ATGAACTGTGTTCTAATGTCTCAGTACATTGAATACGTTGCCGATCGTCTTCTGGTCGA 456709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553614126160