Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1540 185 2e-44 seq1529 185 2e-44 seq843 185 2e-44 >seq1540 Length=32334 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 31558 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 31499 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 31498 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 31441 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 31440 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 31381 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 31380 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 31322 Query 310 AGTTAGGGG 318 |||||| || Sbjct 31321 AGTTAGAGG 31313 >seq1529 Length=32798 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 777 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 836 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 837 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 894 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 895 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 954 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 955 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 1013 Query 310 AGTTAGGGG 318 |||||| || Sbjct 1014 AGTTAGAGG 1022 >seq843 Length=82383 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 26834 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 26775 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 26774 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 26717 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 26716 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 26657 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 26656 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 26598 Query 310 AGTTAGGGG 318 |||||| || Sbjct 26597 AGTTAGAGG 26589 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 36757 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 36816 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 36817 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 36874 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 36875 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 36934 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 36935 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 36993 Query 310 AGTTAGGGG 318 |||||| || Sbjct 36994 AGTTAGAGG 37002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915176735616