Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1540 86.0 4e-15 seq1529 86.0 4e-15 seq843 86.0 4e-15 >seq1540 Length=32334 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 30624 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 30681 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 30682 TAAT-CAACGCGAGCT 30696 >seq1529 Length=32798 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1711 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1654 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1653 TAAT-CAACGCGAGCT 1639 >seq843 Length=82383 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 25900 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 25957 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 25958 TAAT-CAACGCGAGCT 25972 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 37691 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 37634 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 37633 TAAT-CAACGCGAGCT 37619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300792831560