Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1540 174 3e-41 seq1529 174 3e-41 seq843 174 3e-41 >seq1540 Length=32334 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 30880 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 30821 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 30820 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGATTGAAACGTTTTCT 30762 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 30761 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 30702 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 30701 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 30665 >seq1529 Length=32798 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 1455 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 1514 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 1515 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGATTGAAACGTTTTCT 1573 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 1574 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 1633 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 1634 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 1670 >seq843 Length=82383 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 26156 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 26097 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 26096 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGATTGAAACGTTTTCT 26038 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 26037 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 25978 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 25977 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 25941 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 37435 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 37494 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 37495 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGATTGAAACGTTTTCT 37553 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 37554 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 37613 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 37614 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 37650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947175922176