Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq843 466 6e-129 seq494 255 2e-65 seq1540 170 6e-40 seq1529 170 6e-40 >seq843 Length=82383 Score = 466 bits (516), Expect = 6e-129 Identities = 333/386 (86%), Gaps = 25/386 (6%) Strand=Plus/Minus Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG----- 227 || ||||| | || |||||||| ||||||| | |||||||||||||| | ||| Sbjct 30059 TTTCGCTTTACCGAATAAGTAAAGAAACGATCAAAGTAGTGGTATTTCATTGGCGACCAC 30000 Query 228 -------CCGAA---------ACGGC----TCCCACTTATTCTACACCTCTCAAGTCATT 267 ||||| || || |||||| ||| |||||||| ||| ||| | Sbjct 29999 AGAGACACCGAACAGCGCCCTACTGCAGCCTCCCACCTATGCTACACCTTTCATGTCTCT 29940 Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 29939 TCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAA 29880 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 29879 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTG 29820 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29819 ATCCATTCATACGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 29760 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 29759 AGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGACATTCAGAGCAC 29700 Query 508 TGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||| Sbjct 29699 TGGGCAGAAATCACATTGCGTCAACA 29674 Score = 466 bits (516), Expect = 6e-129 Identities = 333/386 (86%), Gaps = 25/386 (6%) Strand=Plus/Minus Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG----- 227 || ||||| | || |||||||| ||||||| | |||||||||||||| | ||| Sbjct 43113 TTTCGCTTTACCGAATAAGTAAAGAAACGATCAAAGTAGTGGTATTTCATTGGCGACCAC 43054 Query 228 -------CCGAA---------ACGGC----TCCCACTTATTCTACACCTCTCAAGTCATT 267 ||||| || || |||||| ||| |||||||| ||| ||| | Sbjct 43053 AGAGACACCGAACAGCGCCCTACTGCAGCCTCCCACCTATGCTACACCTTTCATGTCTCT 42994 Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 42993 TCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAA 42934 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 42933 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGTTG 42874 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42873 ATCCATTCATACGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 42814 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 42813 AGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGACATTCAGAGCAC 42754 Query 508 TGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||| Sbjct 42753 TGGGCAGAAATCACATTGCGTCAACA 42728 Score = 172 bits (190), Expect = 2e-40 Identities = 97/98 (99%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 43775 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGA 43716 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||| Sbjct 43715 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 43678 Score = 145 bits (160), Expect = 2e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 54959 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTCAC 54900 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||| |||||| |||||| ||||| || |||||| || Sbjct 54899 ATTCAGAACACTGGACAGAAAACACATAGCATCAACACCA 54860 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 30346 TTTACTCTAGGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 30287 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 30286 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 30243 >seq494 Length=466724 Score = 255 bits (282), Expect = 2e-65 Identities = 174/196 (89%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| || ||| |||| | |||| |||||||||||||||||| Sbjct 5943 CTCCCACCTATGCTACACCTTTCGTGTCTCTTCAAAGAGTCAGACTAGAGTCAAGCTCAA 5884 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||| Sbjct 5883 CAGGGTCTTCTTTCCCCTCTGATTTTGCCAAGCCCGTTTCCTTGGTTGTGGTTTCGCTAG 5824 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 5823 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 5764 Query 417 ACGAGGCATTTGGCTA 432 || ||| ||||||||| Sbjct 5763 ACTAGGTATTTGGCTA 5748 >seq1540 Length=32334 Score = 170 bits (188), Expect = 6e-40 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 25627 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGAC 25686 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||| Sbjct 25687 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 25723 >seq1529 Length=32798 Score = 170 bits (188), Expect = 6e-40 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 6708 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGAC 6649 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||| Sbjct 6648 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 6612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635158433216