Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2463 167 2e-36 seq147 105 5e-18 >seq2463 Length=168562 Score = 167 bits (184), Expect = 2e-36 Identities = 262/369 (71%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || | || || | |||||| | || || |||| ||||| |||||||| | Sbjct 99742 TGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCAAA 99801 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||| || || |||||||| || || |||||||| | | || || || |||||| | | Sbjct 99802 TTGCTATAGAAAATGTCCATTCCGAAATGTACAGCTTGTTGATTGACACCTACATCCGTG 99861 Query 61376 AGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGA 61435 | | || ||| ||||| ||||||| || || || ||||| ||| |||||| | Sbjct 99862 ATCCGGTGGAGCGTGATTTTCTGTTCAACGCAATTGAAACGATTCCGTGTGTGAAGAAAA 99921 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA----CATTTGGTGAACGA 61491 |||| |||||||| || ||||||| || | || | | ||||| ||||| Sbjct 99922 AAGCAGATTGGGCTTTGCGTTGGATCG---GTG-ACCGCCAATCACCATTTTCCGAACGT 99977 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATT--TTTCAGTGGATCGTTTGCCGCAATCT 61549 ||| | || || || | || || ||| | || |||| | | | | || || |||| | Sbjct 99978 TTGGTTGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCG-GCAGC-TTCGCGTCAATTT 100035 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCAC 61609 | |||||||| || || || || ||||||||| ||||||||||||| |||||||| || | Sbjct 100036 TCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCTC 100095 Query 61610 GCGACGAGG 61618 | ||||||| Sbjct 100096 GTGACGAGG 100104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 61616 AGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 |||| |||| || ||||| ||| |||||| | | ||| || || ||| || | Sbjct 100168 AGGGATTGCACTGCGATTTCGCTTGTTTGCTTT--ATTCGC-ATTTGAAGAACAAACCAT 100224 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 | || || |||||| || | ||| | || ||||| | || || || |||||||||| Sbjct 100225 CCGAAGATCGTGTGCGTCAAATTATCACCGAAGCGGTCAGCATTGAGCAAGAATTTCTGA 100284 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | ||||| ||||| || | || |||||||| |||| || ||||| ||||| |||| Sbjct 100285 CCGACGCGTTGCCAGTACGTTTGATTGGCATGAACTGTGTTCTGATGTCTCAGTACATTG 100344 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG 61829 ||| ||||| || ||||| |||| || |||| Sbjct 100345 AATACGTTGCTGATCGTCTTCTGGTTGAGCTGGG 100378 >seq147 Length=144011 Score = 105 bits (116), Expect = 5e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || || | | || | |||||| || | ||||||||| || || Sbjct 32795 ATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCAGT 32736 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || || || ||| | |||||||||||||| | ||||| ||||| || ||||| Sbjct 32735 TTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGCTC 32676 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||| | || |||||||||||||| || || ||| || || | || |||||||| Sbjct 32675 GGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCCAT 32616 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 ||| |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 32615 GTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 32558 Score = 104 bits (114), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| | || | || | |||||| | || || |||||||| |||||||| || Sbjct 31303 TCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCACATCAGTGACCAATCTCCG 31244 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || ||| | || ||| ||||||||||||||||| |||||||| || | ||| | Sbjct 31243 TCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGGGCGTAAAACAAATCTCTG 31184 Query 66383 GCTCGTTGCTCCTCAATGCC-GTGAT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 |||| | || || ||||| ||| | |||| ||| ||| || || ||||| ||||| | Sbjct 31183 GCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTG 31126 Query 66441 CATGCCATGGTTCCA 66455 | ||||| ||||||| Sbjct 31125 CGTGCCAAGGTTCCA 31111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555683094880